The X-ray structure of the DDB1-DCAF1-Vpr-UNG2 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G | SCOP2B Superfamily | Uracil-DNA glycosylase-like | 8042482 | 3001106 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Uracil-DNA glycosylase-like | 8042482 | 3001106 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | PPP2R1A-like_HEAT, VPS15-like_hel | e5jk7F1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PPP2R1A-like_HEAT, VPS15-like_hel | ECOD (v294.1) |
| H | PPP2R1A-like_HEAT, VPS15-like_hel | e5jk7H1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PPP2R1A-like_HEAT, VPS15-like_hel | ECOD (v294.1) |
| G | PPP2R1A-like_HEAT, VPS15-like_hel | e5jk7G1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PPP2R1A-like_HEAT, VPS15-like_hel | ECOD (v294.1) |
| D | PPP2R1A-like_HEAT, VPS15-like_hel | e5jk7D1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PPP2R1A-like_HEAT, VPS15-like_hel | ECOD (v294.1) |
| E | euk_SelB_III | e5jk7E1 | A: a/b three-layered sandwiches | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: euk_SelB_III | ECOD (v294.1) |
| A | PPP2R1A-like_HEAT, VPS15-like_hel | e5jk7A1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PPP2R1A-like_HEAT, VPS15-like_hel | ECOD (v294.1) |
| B | PPP2R1A-like_HEAT, VPS15-like_hel | e5jk7B1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PPP2R1A-like_HEAT, VPS15-like_hel | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF03167 | Uracil DNA glycosylase superfamily (UDG) | Uracil DNA glycosylase superfamily | Domain | ||
| PF10433 | RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st) | RSE1/DDB1/CPSF1 first beta-propeller | - | Repeat | |
| PF23726 | RSE1/DDB1/CPSF1 second beta-propeller (Beta-prop_RSE1_2nd) | RSE1/DDB1/CPSF1 second beta-propeller | - | Repeat | |
| PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000012 | Retroviral VpR/VpX protein | Family | |
| IPR036895 | Uracil-DNA glycosylase-like domain superfamily | Homologous Superfamily | |
| IPR002043 | Uracil-DNA glycosylase family 1 | Family | |
| IPR018085 | Uracil-DNA glycosylase, active site | Active Site | |
| IPR005122 | Uracil-DNA glycosylase-like | Domain | |
| IPR016024 | Armadillo-type fold | Homologous Superfamily | |
| IPR011989 | Armadillo-like helical | Homologous Superfamily | |
| IPR006594 | LIS1 homology motif | Conserved Site | |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
| IPR033270 | VPRBP/DCAF1 family | Family | |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
| IPR058543 | RSE1/DDB1/CPSF1, second beta-propeller | Domain | |
| IPR004871 | RSE1/DDB1/CPSF1, C-terminal | Domain | |
| IPR050358 | RSE1/DDB1/CPSF1 | Family | |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
| IPR018846 | RSE1/DDB1/CPSF1, first beta-propeller | Domain |














