5J9K | pdb_00005j9k

Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal topless domain (1-209) in complex with rice D53 repressor EAR peptide motif

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	AMP-binding	e5j9kB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: RelE-like	T: RelE-like	F: AMP-binding	ECOD (v294.1)
A	AMP-binding	e5j9kA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: RelE-like	T: RelE-like	F: AMP-binding	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF21889	TPR1-like, CTLH-containing domain (TPR1-like_2nd)	TPR1-like, CTLH-containing domain	This domain is found in Protein TPR1 from Oryza sativa, also known as Topless-related protein 2, and in similar sequences predominantly found in plants and some fungal species. TPR1 is thought to be a downstream regulator of strigolactones signalling ...	This domain is found in Protein TPR1 from Oryza sativa, also known as Topless-related protein 2, and in similar sequences predominantly found in plants and some fungal species. TPR1 is thought to be a downstream regulator of strigolactones signalling. This entry represents the second part of the N-terminal domain of TPR1, which contains the C-terminal to LisH (CTLH) motif, responsible for the binding to the auxin-responsive protein 12 (IAA12) [1-5]. This domain shows an all-alpha configuration.	Domain
A, B	PF17814	LisH-like dimerisation domain (LisH_TPL)	LisH-like dimerisation domain	TOPLESS (TPL) proteins have a highly conserved N-terminal domain containing a lissencephaly homologous (LisH) dimerization motif [1].	Domain
A, B	PF21359	TOPLESS, zinc finger domain (zf_topless)	TOPLESS, zinc finger domain	This is the zinc finger domain of TOPLESS and TOPLESS-related proteins, plant transcriptional co-repressors [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	rice D53 peptide 794-808	protein folding chaperone	response to lipid response to stimulus response to chemical response to strigolactone response to oxygen-containing compound	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
A, B	Protein TPR1	molecular sequestering activity protein sequestering activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process positive regulation of cell communication cellular response to stimulus positive regulation of response to biotic stimulus positive regulation of signal transduction response to stimulus pattern recognition receptor signaling pathway regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response regulation of immune response activation of innate immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus signaling positive regulation of biological process positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress innate immune response response to external biotic stimulus positive regulation of cellular process regulation of signaling positive regulation of innate immune response defense response defense response to symbiont immune system process regulation of cell communication positive regulation of signaling	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR058954	SMAX1-like, AAA+ ATPase lid domain	Domain
C, D	IPR051650	Strigolactone signaling regulator	Family
C, D	IPR004176	Clp, repeat (R) N-terminal domain	Domain
C, D	IPR058680	SMAX1-like, nucleotide binding domain	Domain
C, D	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily
C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR054532	TPL/SMU1, LisH-like dimerisation domain	Domain
A, B	IPR019775	WD40 repeat, conserved site	Conserved Site
A, B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR006595	CTLH, C-terminal LisH motif	Domain
A, B	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B	IPR048419	TOPLESS, zinc finger domain	Domain
A, B	IPR001680	WD40 repeat	Repeat
A, B	IPR054080	TPR1-like, CTLH-containing domain	Domain
A, B	IPR027728	Topless family	Family
A, B	IPR006594	LIS1 homology motif	Conserved Site
A, B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.