E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| JB [auth KB] | SCOP2B Superfamily | Translational proteins | 8089140 | 3000811 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Translational proteins | 8089140 | 3000811 | SCOP2B (2022-06-29) |
| GD [auth HD] | SCOP2B Superfamily | Ribosomal protein S20 | 8101559 | 3001362 | SCOP2B (2022-06-29) |
| CB | SCOP2B Superfamily | Ribosomal protein S20 | 8101559 | 3001362 | SCOP2B (2022-06-29) |
| FD [auth GD] | SCOP2B Superfamily | Ribosomal protein S19 | 8098856 | 3000686 | SCOP2B (2022-06-29) |
| BB | SCOP2B Superfamily | Ribosomal protein S19 | 8098856 | 3000686 | SCOP2B (2022-06-29) |
| WA | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052583 | 3000068 | SCOP2B (2022-06-29) |
| AD [auth BD] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052583 | 3000068 | SCOP2B (2022-06-29) |
| ZC [auth AD] | SCOP2B Superfamily | S13-like H2TH domain | 8098854 | 3000053 | SCOP2B (2022-06-29) |
| VA | SCOP2B Superfamily | S13-like H2TH domain | 8098854 | 3000053 | SCOP2B (2022-06-29) |
| YC [auth ZC] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8098824 | 3000135 | SCOP2B (2022-06-29) |
| UA | SCOP2B Superfamily | Nucleic acid-binding proteins | 8098824 | 3000135 | SCOP2B (2022-06-29) |
| XC [auth YC] | SCOP2B Superfamily | Translational machinery components | 8098852 | 3000571 | SCOP2B (2022-06-29) |
| TA | SCOP2B Superfamily | Translational machinery components | 8098852 | 3000571 | SCOP2B (2022-06-29) |
| WC [auth XC] | SCOP2B Superfamily | Ribosomal protein S10 | 8098850 | 3001336 | SCOP2B (2022-06-29) |
| SA | SCOP2B Superfamily | Ribosomal protein S10 | 8098850 | 3001336 | SCOP2B (2022-06-29) |
| VC [auth WC] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8093728 | 3000100 | SCOP2B (2022-06-29) |
| RA | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8093728 | 3000100 | SCOP2B (2022-06-29) |
| UC [auth VC] | SCOP2B Superfamily | Ribosomal protein S8 | 8098860 | 3000709 | SCOP2B (2022-06-29) |
| QA | SCOP2B Superfamily | Ribosomal protein S8 | 8098860 | 3000709 | SCOP2B (2022-06-29) |
| TC [auth UC] | SCOP2B Superfamily | Ribosomal protein S7 | 8093626 | 3000799 | SCOP2B (2022-06-29) |
| PA | SCOP2B Superfamily | Ribosomal protein S7 | 8093626 | 3000799 | SCOP2B (2022-06-29) |
| SC [auth TC] | SCOP2B Superfamily | Ribosomal protein S6 | 8098858 | 3001323 | SCOP2B (2022-06-29) |
| OA | SCOP2B Superfamily | Ribosomal protein S6 | 8098858 | 3001323 | SCOP2B (2022-06-29) |
| QC [auth RC] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8093624 | 3001473 | SCOP2B (2022-06-29) |
| MA | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8093624 | 3001473 | SCOP2B (2022-06-29) |
| OC [auth PC] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063836 | 3001397 | SCOP2B (2022-06-29) |
| KA | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063836 | 3001397 | SCOP2B (2022-06-29) |
| NC [auth OC] | SCOP2B Superfamily | Peptidyl-tRNA hydrolase domain-like | 8054407 | 3001421 | SCOP2B (2022-06-29) |
| NC [auth OC] | SCOP2B Superfamily | RNA-binding domain, RBD | 8054405 | 3000110 | SCOP2B (2022-06-29) |
| JA | SCOP2B Superfamily | Peptidyl-tRNA hydrolase domain-like | 8054407 | 3001421 | SCOP2B (2022-06-29) |
| JA | SCOP2B Superfamily | RNA-binding domain, RBD | 8054405 | 3000110 | SCOP2B (2022-06-29) |
| KC [auth LC] | SCOP2B Superfamily | Ribosomal protein L36 | 8093658 | 3001346 | SCOP2B (2022-06-29) |
| GA | SCOP2B Superfamily | Ribosomal protein L36 | 8093658 | 3001346 | SCOP2B (2022-06-29) |
| JC [auth KC] | SCOP2B Superfamily | L35p-like | 8099912 | 3000790 | SCOP2B (2022-06-29) |
| FA | SCOP2B Superfamily | L35p-like | 8099912 | 3000790 | SCOP2B (2022-06-29) |
| HC [auth IC] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099892 | 3001320 | SCOP2B (2022-06-29) |
| DA | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099892 | 3001320 | SCOP2B (2022-06-29) |
| GC [auth HC] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8081579 | 3001320 | SCOP2B (2022-06-29) |
| CA | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8081579 | 3001320 | SCOP2B (2022-06-29) |
| EC [auth FC] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8099900 | 3001378 | SCOP2B (2022-06-29) |
| AA | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8099900 | 3001378 | SCOP2B (2022-06-29) |
| Z | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8076744 | 3000713 | SCOP2B (2022-06-29) |
| DC [auth EC] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8076744 | 3000713 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Ribosomal L27 protein-like | 8041210 | 3000539 | SCOP2B (2022-06-29) |
| BC [auth CC] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8041210 | 3000539 | SCOP2B (2022-06-29) |
| YB [auth ZB] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8099896 | 3000210 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8099896 | 3000210 | SCOP2B (2022-06-29) |
| XB [auth YB] | SCOP2B Superfamily | Ribosomal protein L22 | 8099898 | 3001078 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Ribosomal protein L22 | 8099898 | 3001078 | SCOP2B (2022-06-29) |
| WB [auth XB] | SCOP2B Superfamily | l21p-like | 8093656 | 3002005 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | l21p-like | 8093656 | 3002005 | SCOP2B (2022-06-29) |
| VB [auth WB] | SCOP2B Superfamily | Ribosomal protein L20 | 8093660 | 3000563 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Ribosomal protein L20 | 8093660 | 3000563 | SCOP2B (2022-06-29) |
| TB [auth UB] | SCOP2B Superfamily | Translational machinery components | 8074014 | 3000571 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Translational machinery components | 8074014 | 3000571 | SCOP2B (2022-06-29) |
| QB [auth RB] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099902 | 3001045 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099902 | 3001045 | SCOP2B (2022-06-29) |
| PB [auth QB] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8093738 | 3000433 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8093738 | 3000433 | SCOP2B (2022-06-29) |
| OB [auth PB] | SCOP2B Superfamily | Ribosomal protein L13 | 8099906 | 3001134 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Ribosomal protein L13 | 8099906 | 3001134 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| MB [auth NB] | Ribosomal_L6 | e5j4dNB2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| MB [auth NB] | Ribosomal_L6_1 | e5j4dNB1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
| I | Ribosomal_L6 | e5j4dI2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| I | Ribosomal_L6_1 | e5j4dI1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
| LB [auth MB] | Ribosomal_L5_C | e5j4dMB1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
| H | Ribosomal_L5_C | e5j4dH1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
| KB [auth LB] | Ribosomal_L4 | e5j4dLB1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| G | Ribosomal_L4 | e5j4dG1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| JB [auth KB] | Ribosomal_L3 | e5j4dKB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| F | Ribosomal_L3 | e5j4dF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| GD [auth HD] | Ribosomal_S20p | e5j4dHD1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
| CB | Ribosomal_S20p | e5j4dCB1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
| FD [auth GD] | Ribosomal_S19 | e5j4dGD1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
| BB | Ribosomal_S19 | e5j4dBB1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
| ED [auth FD] | Ribosomal_S18 | e5j4dFD1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
| AB | Ribosomal_S18 | e5j4dAB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
| ZA | Ribosomal_S17_1 | e5j4dZA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| DD [auth ED] | Ribosomal_S17_1 | e5j4dED1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| YA | Ribosomal_S16_1 | e5j4dYA1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
| CD [auth DD] | Ribosomal_S16_1 | e5j4dDD1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
| IB [auth JB] | Ribosomal_L2_1 | e5j4dJB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| IB [auth JB] | Ribosomal_L2_C | e5j4dJB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
| E | Ribosomal_L2_1 | e5j4dE2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| E | Ribosomal_L2_C | e5j4dE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
| XA | Ribosomal_S15_1 | e5j4dXA1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
| BD [auth CD] | Ribosomal_S15_1 | e5j4dCD1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
| WA | Ribosomal_S14 | e5j4dWA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14 | ECOD (1.6) |
| AD [auth BD] | Ribosomal_S14 | e5j4dBD1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14 | ECOD (1.6) |
| ZC [auth AD] | Ribosomal_S13_1 | e5j4dAD1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
| VA | Ribosomal_S13_1 | e5j4dVA1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
| YC [auth ZC] | Ribosom_S12_S23 | e5j4dZC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| UA | Ribosom_S12_S23 | e5j4dUA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| XC [auth YC] | Ribosomal_S11 | e5j4dYC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
| TA | Ribosomal_S11 | e5j4dTA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
| WC [auth XC] | Ribosomal_S10 | e5j4dXC1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
| SA | Ribosomal_S10 | e5j4dSA1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
| VC [auth WC] | Ribosomal_S9 | e5j4dWC1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
| RA | Ribosomal_S9 | e5j4dRA1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
| UC [auth VC] | Ribosomal_S8_N | e5j4dVC1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
| UC [auth VC] | Ribosomal_S8_C | e5j4dVC2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
| QA | Ribosomal_S8_N | e5j4dQA2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
| QA | Ribosomal_S8_C | e5j4dQA1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
| TC [auth UC] | Ribosomal_S7_1 | e5j4dUC1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
| PA | Ribosomal_S7_1 | e5j4dPA1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
| SC [auth TC] | Ribosomal_S6 | e5j4dTC1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
| OA | Ribosomal_S6 | e5j4dOA1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
| RC [auth SC] | Ribosomal_S5_C | e5j4dSC2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
| RC [auth SC] | Ribosomal_S5 | e5j4dSC1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
| NA | Ribosomal_S5_C | e5j4dNA2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
| NA | Ribosomal_S5 | e5j4dNA1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
| QC [auth RC] | S4 | e5j4dRC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
| MA | S4 | e5j4dMA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
| PC [auth QC] | Ribosomal_S3_C | e5j4dQC2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
| PC [auth QC] | KH_2_1 | e5j4dQC1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
| LA | Ribosomal_S3_C | e5j4dLA1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
| LA | KH_2_1 | e5j4dLA2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
| OC [auth PC] | Ribosomal_S2 | e5j4dPC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
| KA | Ribosomal_S2 | e5j4dKA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
| NC [auth OC] | PCRF_C | e5j4dOC1 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in release factor (From Topology) | T: Ferredoxin-like domain in release factor | F: PCRF_C | ECOD (1.6) |
| NC [auth OC] | RF-1_N | e5j4dOC2 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_N | ECOD (1.6) |
| NC [auth OC] | RF-1_C | e5j4dOC3 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_C | ECOD (1.6) |
| JA | PCRF_C | e5j4dJA1 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in release factor (From Topology) | T: Ferredoxin-like domain in release factor | F: PCRF_C | ECOD (1.6) |
| JA | RF-1_N | e5j4dJA2 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_N | ECOD (1.6) |
| JA | RF-1_C | e5j4dJA3 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_C | ECOD (1.6) |
| KC [auth LC] | Ribosomal_L36 | e5j4dLC1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
| GA | Ribosomal_L36 | e5j4dGA1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
| JC [auth KC] | Ribosomal_L35p | e5j4dKC1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| FA | Ribosomal_L35p | e5j4dFA1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| IC [auth JC] | Ribosomal_L34 | e5j4dJC1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| EA | Ribosomal_L34 | e5j4dEA1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| HC [auth IC] | Ribosomal_L33 | e5j4dIC1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
| DA | Ribosomal_L33 | e5j4dDA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
| GC [auth HC] | Ribosomal_L32p | e5j4dHC1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| CA | Ribosomal_L32p | e5j4dCA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| FC [auth GC] | Ribosomal_L31 | e5j4dGC1 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: Ribosomal_L31 | ECOD (1.6) |
| BA | Ribosomal_L31 | e5j4dBA1 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: Ribosomal_L31 | ECOD (1.6) |
| EC [auth FC] | Ribosomal_L30 | e5j4dFC1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| AA | Ribosomal_L30 | e5j4dAA1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| Z | Ribosomal_L29 | e5j4dZ1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| DC [auth EC] | Ribosomal_L29 | e5j4dEC1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| Y | Ribosomal_L28 | e5j4dY1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| CC [auth DC] | Ribosomal_L28 | e5j4dDC1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| X | Ribosomal_L27 | e5j4dX1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| BC [auth CC] | Ribosomal_L27 | e5j4dCC1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| W | Ribosomal_L25p | e5j4dW1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| W | Ribosomal_TL5_C | e5j4dW2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: Ribosomal_TL5_C | ECOD (1.6) |
| AC [auth BC] | Ribosomal_L25p | e5j4dBC1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| AC [auth BC] | Ribosomal_TL5_C | e5j4dBC2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: Ribosomal_TL5_C | ECOD (1.6) |
| ZB [auth AC] | ribosomal_L24 | e5j4dAC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24 | ECOD (1.6) |
| V | ribosomal_L24 | e5j4dV1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24 | ECOD (1.6) |
| YB [auth ZB] | Ribosomal_L23_2 | e5j4dZB1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| U | Ribosomal_L23_2 | e5j4dU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| XB [auth YB] | Ribosomal_L22 | e5j4dYB1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| T | Ribosomal_L22 | e5j4dT1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| WB [auth XB] | Ribosomal_L21p | e5j4dXB1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| S | Ribosomal_L21p | e5j4dS1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| VB [auth WB] | Ribosomal_L20 | e5j4dWB1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| R | Ribosomal_L20 | e5j4dR1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| UB [auth VB] | Ribosomal_L19 | e5j4dVB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| Q | Ribosomal_L19 | e5j4dQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| TB [auth UB] | Ribosomal_L18p | e5j4dUB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| P | Ribosomal_L18p | e5j4dP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| SB [auth TB] | Ribosomal_L17_1 | e5j4dTB1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
| O | Ribosomal_L17_1 | e5j4dO1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
| RB [auth SB] | Ribosomal_L16 | e5j4dSB1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| N | Ribosomal_L16 | e5j4dN1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| QB [auth RB] | Ribosomal_L27A | e5j4dRB1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| M | Ribosomal_L27A | e5j4dM1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| PB [auth QB] | Ribosomal_L14 | e5j4dQB1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| L | Ribosomal_L14 | e5j4dL1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| OB [auth PB] | Ribosomal_L13 | e5j4dPB1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| K | Ribosomal_L13 | e5j4dK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| NB [auth OB] | Ribosomal_L9_N | e5j4dOB2 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: Ribosomal_L9_N | ECOD (1.6) |
| NB [auth OB] | Ribosomal_L9_C | e5j4dOB1 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: Ribosomal_L9_C | ECOD (1.6) |
| J | Ribosomal_L9_N | e5j4dJ1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: Ribosomal_L9_N | ECOD (1.6) |
| J | Ribosomal_L9_C | e5j4dJ2 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: Ribosomal_L9_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| JA, NC [auth OC] | PF00472 | RF-1 domain (RF-1) | RF-1 domain | This domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domai ... | Domain |
| EA, IC [auth JC] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| BC [auth CC], X | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |














