5IW7 | pdb_00005iw7

Crystal structure of yeast Tsr1, a pre-40S ribosome synthesis factor

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Metallophos	e5iw7D1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Metallophos	ECOD (develop294)
A	Tsr1_G-like	e5iw7A1	A: alpha bundles	X: Alkaline phosphatase-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Tsr1_G-like	ECOD (develop294)
A	AARP2CN	e5iw7A2	A: alpha bundles	X: Alkaline phosphatase-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: AARP2CN	ECOD (develop294)
A	RIBIOP_C	e5iw7A3	A: alpha bundles	X: Alkaline phosphatase-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: RIBIOP_C	ECOD (develop294)
A	Cadherin	e5iw7A4	A: alpha bundles	X: Alkaline phosphatase-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Cadherin	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08142	AARP2CN (NUC121) domain (AARP2CN)	AARP2CN (NUC121) domain	This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1].	Domain
A, B, C, D	PF22298	Tsr1, G-like domain (Tsr1_G-like)	Tsr1, G-like domain	This entry represents the G-like (guanine nucleotide-binding domain) domain, found in Tsr1, a protein required for normal export of the pre-40S particles from the nucleus to the cytoplasm during 40S ribosomal subunit synthesis [1-5]. This domain adop ...	This entry represents the G-like (guanine nucleotide-binding domain) domain, found in Tsr1, a protein required for normal export of the pre-40S particles from the nucleus to the cytoplasm during 40S ribosomal subunit synthesis [1-5]. This domain adopts a GTPase-like fold, but lacks a P-loop and is not predicted to bind GTP.	Domain
A, B, C, D	PF04950	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal (RIBIOP_C)	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ribosome biogenesis protein TSR1,Ribosome biogenesis protein TSR1	RNA binding binding U3 snoRNA binding snoRNA binding nucleic acid binding ribonucleoprotein complex binding protein-containing complex binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding RNA binding binding U3 snoRNA binding snoRNA binding nucleic acid binding ribonucleoprotein complex binding protein-containing complex binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of SSU-rRNA ribosomal small subunit biogenesis RNA 3'-end processing endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) rRNA 3'-end processing	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, small subunit precursor 90S preribosome cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR007034	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Domain
A, B, C, D	IPR030387	Bms1/Tsr1-type G domain	Domain
A, B, C, D	IPR039761	Ribosome biogenesis protein Bms1/Tsr1	Family
A, B, C, D	IPR012948	AARP2CN	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.