5IM6 | pdb_00005im6

Crystal structure of designed two-component self-assembling icosahedral cage I32-28

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
AA [auth Q]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
BA [auth R]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
CA [auth S]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
DA [auth T]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
U [auth K]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
V [auth L]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
W [auth M]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
X [auth N]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
Y [auth O]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
Z [auth P]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064689	3001354	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
K [auth U]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
L [auth V]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
M [auth W]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
N [auth X]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
O [auth Y]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
P [auth Z]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
Q [auth a]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
R [auth b]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
S [auth c]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)
T [auth d]	SCOP2B Superfamily	Bet v1-like	8106385	3000738	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	e5im6A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
AA [auth Q]	e5im6Q1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
B	e5im6B1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
BA [auth R]	e5im6R1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
C	e5im6C1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
CA [auth S]	e5im6S1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
D	e5im6D1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
DA [auth T]	e5im6T1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
E	e5im6E1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
F	e5im6F1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
G	e5im6G1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
H	e5im6H1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
I	e5im6I1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
J	e5im6J1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
U [auth K]	e5im6K1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
V [auth L]	e5im6L1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
W [auth M]	e5im6M1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
X [auth N]	e5im6N1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
Y [auth O]	e5im6O1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
Z [auth P]	e5im6P1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
EA [auth e]	e5im6e1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
FA [auth f]	e5im6f1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
GA [auth g]	e5im6g1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
HA [auth h]	e5im6h1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
IA [auth i]	e5im6i1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
JA [auth j]	e5im6j1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
K [auth U]	e5im6U1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
KA [auth k]	e5im6k1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
L [auth V]	e5im6V1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
LA [auth l]	e5im6l1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
M [auth W]	e5im6W1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
MA [auth m]	e5im6m1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
N [auth X]	e5im6X1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
NA [auth n]	e5im6n1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
O [auth Y]	e5im6Y1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
P [auth Z]	e5im6Z1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
Q [auth a]	e5im6a1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
R [auth b]	e5im6b1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
S [auth c]	e5im6c1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
T [auth d]	e5im6d1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], K [auth U], KA [auth k], L [auth V], LA [auth l], M [auth W], MA [auth m], N [auth X], NA [auth n], O [auth Y], P [auth Z], Q [auth a], R [auth b], S [auth c], T [auth d]	PF12723	Protein of unknown function (DUF3809) (DUF3809)	Protein of unknown function (DUF3809)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth Q], B, BA [auth R], C, A, AA [auth Q], B, BA [auth R], C, CA [auth S], D, DA [auth T], E, F, G, H, I, J, U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	Designed self-assembling icosahedral cage I32-28 trimeric subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding corrinoid adenosyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity cation binding metal ion binding	cobalamin metabolic process cobalamin biosynthetic process water-soluble vitamin biosynthetic process tetrapyrrole metabolic process small molecule biosynthetic process vitamin biosynthetic process vitamin metabolic process tetrapyrrole biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process	-
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], K [auth U], KA [auth k], L [auth V], LA [auth l], M [auth W], MA [auth m], N [auth X], NA [auth n], O [auth Y], P [auth Z], Q [auth a], R [auth b], S [auth c], T [auth d]	Designed self-assembling icosahedral cage I32-28 dimeric subunit	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth Q], B, BA [auth R], C, A, AA [auth Q], B, BA [auth R], C, CA [auth S], D, DA [auth T], E, F, G, H, I, J, U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR029499	Corrinoid adenosyltransferase, PduO-type	Family
A, AA [auth Q], B, BA [auth R], C, A, AA [auth Q], B, BA [auth R], C, CA [auth S], D, DA [auth T], E, F, G, H, I, J, U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR036451	Cobalamin adenosyltransferase-like superfamily	Homologous Superfamily
A, AA [auth Q], B, BA [auth R], C, A, AA [auth Q], B, BA [auth R], C, CA [auth S], D, DA [auth T], E, F, G, H, I, J, U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR016030	Cobalamin adenosyltransferase-like	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], K [auth U], KA [auth k], L [auth V], LA [auth l], M [auth W], MA [auth m], N [auth X], NA [auth n], O [auth Y], P [auth Z], Q [auth a], R [auth b], S [auth c], T [auth d]	IPR024219	Protein of unknown function DUF3809	Family