5IJO
Alternative composite structure of the inner ring of the human nuclear pore complex (16 copies of Nup188, 16 copies of Nup205)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2022-06-29) |
W | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2022-06-29) |
Y | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2B (2022-06-29) |
Z | SCOP2B Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2B (2022-06-29) |
J | SCOP2 Family | Nup188-like | 8044976 | 4004233 | SCOP2 (2022-06-29) |
J | SCOP2 Superfamily | Scaffolding nucleoporins | 8053964 | 3002255 | SCOP2 (2022-06-29) |
V | SCOP2B Superfamily | Scaffolding nucleoporins | 8053964 | 3002255 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | Nucleoporin_N | e5ijoE1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
E | Nucleoporin_C_C | e5ijoE2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
E | Nucleoporin_C_N | e5ijoE3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
K | Nucleoporin_N | e5ijoK1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
K | Nucleoporin_C_C | e5ijoK2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
K | Nucleoporin_C_N | e5ijoK3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
Q | Nucleoporin_N | e5ijoQ1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
Q | Nucleoporin_C_C | e5ijoQ2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
Q | Nucleoporin_C_N | e5ijoQ3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
W | Nucleoporin_N | e5ijoW1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
W | Nucleoporin_C_C | e5ijoW2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
W | Nucleoporin_C_N | e5ijoW3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
A | Nucleoporin_N | e5ijoA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
A | Nucleoporin_C_N | e5ijoA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
B | Nucleoporin_N | e5ijoB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
B | Nucleoporin_C_N | e5ijoB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
I | Nic96 | e5ijoI1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nic96 | ECOD (1.6) |
O | Nic96 | e5ijoO1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nic96 | ECOD (1.6) |
C | Nic96 | e5ijoC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nic96 | ECOD (1.6) |
U | Nic96 | e5ijoU1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nic96 | ECOD (1.6) |
D | Nup192_1st | e5ijoD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nup192_1st | ECOD (1.6) |
D | Nup192_2nd | e5ijoD2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nup192_2nd | ECOD (1.6) |
P | Nup192_1st | e5ijoP1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nup192_1st | ECOD (1.6) |
P | Nup192_2nd | e5ijoP2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nup192_2nd | ECOD (1.6) |
J | Nup188 | e5ijoJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nup188 | ECOD (1.6) |
V | Nup188 | e5ijoV1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Nup188 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03177 | Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C) | Non-repetitive/WGA-negative nucleoporin C-terminal | - | Repeat | |
PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat | |
PF04097 | Nup93/Nic96 (Nic96) | Nup93/Nic96 | - | Repeat | |
PF11894 | Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192) | Nuclear pore complex scaffold, nucleoporins 186/192/205 | - | Repeat | |
PF18437 | Nup54 C-terminal interacting domain (Nup54_C) | Nup54 C-terminal interacting domain | The mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-he ... | Domain | |
PF13874 | Nucleoporin complex subunit 54 (Nup54) | Nucleoporin complex subunit 54 | This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ... | Domain | |
PF10487 | Nucleoporin Nup188, N-terminal (Nup188_N) | Nucleoporin Nup188, N-terminal | - | Repeat | |
PF21093 | Nucleoporin Nup188, N-terminal subdomain III (Nup188_N-subdom_III) | Nucleoporin Nup188, N-terminal subdomain III | - | Repeat | |
PF21094 | Nup188 SH3-like domain (Nup188_SH3-like) | Nup188 SH3-like domain | Nup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically loca ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042537 | Nucleoporin, Nup155-like, C-terminal, subdomain 2 | Homologous Superfamily | |
IPR042533 | Nucleoporin, Nup155-like, C-terminal, subdomain 1 | Homologous Superfamily | |
IPR042538 | Nucleoporin, Nup155-like, C-terminal, subdomain 3 | Homologous Superfamily | |
IPR014908 | Nucleoporin, Nup133/Nup155-like, N-terminal | Domain | |
IPR004870 | Nucleoporin, Nup155-like | Family | |
IPR007231 | Nucleoporin interacting component Nup93/Nic96 | Family | |
IPR021827 | Nucleoporin Nup186/Nup192/Nup205 | Family | |
IPR040985 | Nup54, C-terminal interacting domain | Domain | |
IPR024864 | Nucleoporin Nup54/Nup57/Nup44 | Family | |
IPR025712 | Nucleoporin Nup54, alpha-helical domain | Domain | |
IPR024882 | Nucleoporin p58/p45/NUP49 | Family | |
IPR007758 | Nucleoporin, NSP1-like, C-terminal | Domain | |
IPR026010 | Nucleoporin NSP1/NUP62 | Family | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR044840 | Nucleoporin Nup188 | Family | |
IPR048883 | Nucleoporin Nup188, N-terminal subdomain III | Domain | |
IPR018864 | Nucleoporin Nup188, N-terminal | Domain |