5IC8 | pdb_00005ic8

Structure of UTP6

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CDC48_N	e5ic8D1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: CDC48_N	ECOD (v294.1)
C		e5ic8C1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F:	ECOD (v294.1)
B	TIG	e5ic8B1	A: a/b three-layered sandwiches	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: TIG	ECOD (v294.1)
A	p450	e5ic8A1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: p450	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF23233	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat (HAT_Syf1_CNRKL1_N)	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative uncharacterized protein	RNA binding binding snoRNA binding nucleic acid binding	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing macromolecule metabolic process ribonucleoprotein complex biogenesis rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis ribosome biogenesis maturation of SSU-rRNA cellular component organization or biogenesis rRNA metabolic process ribosomal small subunit biogenesis mRNA processing mRNA metabolic process	membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure Pwp2p-containing subcomplex of 90S preribosome nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen 90S preribosome intracellular organelle membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure Pwp2p-containing subcomplex of 90S preribosome nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen 90S preribosome intracellular organelle cellular anatomical structure organelle lumen organelle ribonucleoprotein complex membraneless organelle nuclear lumen small-subunit processome spliceosomal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003107	HAT (Half-A-TPR) repeat	Repeat
A, B, C, D	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D	IPR013949	U3 small nucleolar RNA-associated protein 6	Family
A, B, C, D	IPR055347	U3 small nucleolar RNA-associated protein 6, N-terminal	Domain
A, B, C, D	IPR055433	Pre-mRNA-splicing factor Syf1-like, N-terminal HAT-repeats domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.