5I44 | pdb_00005i44

Structure of RacA-DNA complex; P21 form

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth K]	MerR_1	e5i44K1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
I [auth J]	MerR_1	e5i44J1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
H [auth I]	MerR_1	e5i44I1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
G [auth H]	MerR_1	e5i44H1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
F	MerR_1	e5i44F1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
E [auth G]	MerR_1	e5i44G1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
D [auth E]	MerR_1	e5i44E1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
C [auth D]	MerR_1	e5i44D1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
B [auth A]	MerR_1	e5i44A1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
A [auth B]	MerR_1	e5i44B1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth K]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
I [auth J]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
H [auth I]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
G [auth H]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
F	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
E [auth G]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
D [auth E]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
C [auth D]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
B [auth A]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)
A [auth B]	1.10.1660.10	Mainly Alpha	Orthogonal Bundle	Multidrug-efflux Transporter Regulator	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], F, G [auth H], H [auth I], I [auth J], J [auth K]	PF13411	MerR HTH family regulatory protein (MerR_1)	MerR HTH family regulatory protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth U], L [auth T], M [auth Z], N [auth R], O [auth P], K [auth U], L [auth T], M [auth Z], N [auth R], O [auth P], P [auth W]	DNA (5'-D(TPGPAPCPGPCPCPGPGPCPGPTPCPA)-3')	-	-	-
A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], F, G [auth H], H [auth I], I [auth J], J [auth K]	Chromosome-anchoring protein RacA	DNA binding double-stranded DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cell cycle chromosome segregation cell cycle process sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation cell division asymmetric cell division cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], F, G [auth H], H [auth I], I [auth J], J [auth K]	IPR009061	Putative DNA-binding domain superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], F, G [auth H], H [auth I], I [auth J], J [auth K]	IPR023522	Chromosome-anchoring protein RacA	Family
A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], A [auth B], B [auth A], C [auth D], D [auth E], E [auth G], F, G [auth H], H [auth I], I [auth J], J [auth K]	IPR000551	MerR-type HTH domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.