5I35

Structure of the Human mitochondrial kinase COQ8A R611K with AMPPNP (Cerebellar Ataxia and Ubiquinone Deficiency Through Loss of Unorthodox Kinase Activity)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ABC1	e5i35A1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: ABC1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03109	ABC1 atypical kinase-like domain (ABC1)	ABC1 atypical kinase-like domain	This family includes ABC1 from yeast [1] and AarF from E. coli [2]. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cyto ...	This family includes ABC1 from yeast [1] and AarF from E. coli [2]. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [1] and E. coli AarF is required for ubiquinone production [2]. It has been suggested that members of the ABC1 family are novel chaperonins [1]. These proteins are unrelated to the ABC transporter proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Atypical kinase ADCK3, mitochondrial	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process small molecule biosynthetic process cellular biosynthetic process ubiquinone biosynthetic process quinone metabolic process cellular ketone metabolic process organic substance metabolic process biosynthetic process quinone biosynthetic process phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process small molecule biosynthetic process cellular biosynthetic process ubiquinone biosynthetic process quinone metabolic process cellular ketone metabolic process organic substance metabolic process biosynthetic process quinone biosynthetic process organic substance biosynthetic process small molecule metabolic process ubiquinone metabolic process ketone biosynthetic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR034646	ADCK3-like domain	Domain
A	IPR004147	ABC1 atypical kinase-like domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8NI60	autosomal recessive ataxia due to ubiquinone deficiency coenzyme Q10 deficiency coenzyme Q10 deficiency, primary, 1 amyotrophic lateral sclerosis atypical teratoid rhabdoid tumor ductal breast carcinoma in situ juvenile dermatomyositis Mitochondrial Diseases pancreatic ductal adenocarcinoma astrocytic tumor intellectual disability leukodystrophy neurodegenerative disease psoriasis Charcot-Marie-Tooth disease autosomal recessive ataxia due to ubiquinone deficiency coenzyme Q10 deficiency coenzyme Q10 deficiency, primary, 1 amyotrophic lateral sclerosis atypical teratoid rhabdoid tumor ductal breast carcinoma in situ juvenile dermatomyositis Mitochondrial Diseases pancreatic ductal adenocarcinoma astrocytic tumor intellectual disability leukodystrophy neurodegenerative disease psoriasis Charcot-Marie-Tooth disease Duchenne muscular dystrophy invasive ductal breast carcinoma malignant pancreatic neoplasm osteosarcoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.