5I0K | pdb_00005i0k

Insights into Substrate Modification by Dehydratases from Type I Polyketide Synthases

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8055940	3000149	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8055941	3000149	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase, Kdo	e5i0kA1	A: a/b three-layered sandwiches	X: CRISPR-associated protein Cse2	H: CRISPR-associated protein Cse2	T: CRISPR-associated protein Cse2	F: Pkinase, Kdo	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.129.110	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21089	Polyketide synthase dehydratase domain (PKS_DH_N)	Polyketide synthase dehydratase domain	This domain is part of a dehydratase domain found in diverse PKS enzymes. This domain adopts a HotDog fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Phthiocerol synthesis polyketide synthase type I PpsC	oxidoreductase activity catalytic activity vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity oxidoreductase activity catalytic activity vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity fatty acid synthase activity	cellular component biogenesis peptidoglycan-based cell wall biogenesis cell wall biogenesis cell wall organization or biogenesis Actinobacterium-type cell wall biogenesis cellular process cellular component organization or biogenesis polyol metabolic process small molecule biosynthetic process lipid biosynthetic process alcohol metabolic process primary metabolic process biosynthetic process phenol-containing compound metabolic process cellular component biogenesis peptidoglycan-based cell wall biogenesis cell wall biogenesis cell wall organization or biogenesis Actinobacterium-type cell wall biogenesis cellular process cellular component organization or biogenesis polyol metabolic process small molecule biosynthetic process lipid biosynthetic process alcohol metabolic process primary metabolic process biosynthetic process phenol-containing compound metabolic process polyol biosynthetic process alcohol biosynthetic process phenol-containing compound biosynthetic process small molecule metabolic process metabolic process phenolic phthiocerol biosynthetic process lipid metabolic process glycol biosynthetic process diol biosynthetic process glycol metabolic process phthiocerol biosynthetic process diol metabolic process cellular component organization cellular component assembly DIM/DIP cell wall layer assembly fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process carboxylic acid metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process monocarboxylic acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane protein-containing complex catalytic complex polyketide synthase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
A	IPR006162	Phosphopantetheine attachment site	PTM
A	IPR013154	Alcohol dehydrogenase-like, N-terminal	Domain
A	IPR057326	Ketoreductase domain	Domain
A	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
A	IPR049552	Polyketide synthase, dehydratase domain, N-terminal	Domain
A	IPR049900	Polyketide synthase, dehydratase domain	Domain
A	IPR049551	Polyketide synthase, dehydratase domain, C-terminal	Domain
A	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
A	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
A	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
A	IPR020807	Polyketide/metazoan fatty acid synthase-like, dehydratase domain	Domain
A	IPR036736	ACP-like superfamily	Homologous Superfamily
A	IPR014043	Acyl transferase domain	Domain
A	IPR020843	Enoylreductase domain	Domain
A	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
A	IPR011032	GroES-like superfamily	Homologous Superfamily
A	IPR009081	Phosphopantetheine binding ACP domain	Domain
A	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
A	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
A	IPR016039	Thiolase-like	Homologous Superfamily
A	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
A	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A	IPR018201	Beta-ketoacyl synthase, active site	Active Site
A	IPR042104	Polyketide synthase, dehydratase domain superfamily	Homologous Superfamily