5HZK

Crystal structure of photoinhibitable Intersectin1 containing wildtype LOV2 domain in complex with Cdc42

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	DBL homology domain (DH-domain)	8040298	3000793	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8040303	3000134	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DBL homology domain (DH-domain)	8040298	3000793	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ras	e5hzkA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Ras	ECOD (1.6)
C	Ras	e5hzkC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Ras	ECOD (1.6)
D	PH_13	e5hzkD2	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH_13	ECOD (1.6)
D	RhoGEF	e5hzkD3	A: alpha bundles	X: DH domain-like	H: DBL homology domain (DH-domain) (From Topology)	T: DBL homology domain (DH-domain)	F: RhoGEF	ECOD (1.6)
D	PAS	e5hzkD1	A: a+b three layers	X: Profilin-like	H: sensor domains (From Topology)	T: sensor domains	F: PAS	ECOD (1.6)
B	PH_13	e5hzkB3	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH_13	ECOD (1.6)
B	RhoGEF	e5hzkB2	A: alpha bundles	X: DH domain-like	H: DBL homology domain (DH-domain) (From Topology)	T: DBL homology domain (DH-domain)	F: RhoGEF	ECOD (1.6)
B	PAS	e5hzkB1	A: a+b three layers	X: Profilin-like	H: sensor domains (From Topology)	T: sensor domains	F: PAS	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF13426	PAS domain (PAS_9)	PAS domain	This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).	Domain
B, D	PF16652	Pleckstrin homology domain (PH_13)	Pleckstrin homology domain	-	Domain
B, D	PF00621	RhoGEF domain (RhoGEF)	RhoGEF domain	Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that Pfam:PF00169 domains invariably occur C-terminal to RhoGEF/DH domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Cell division control protein 42 homolog	-	-	-
B, D	Intersectin-1,NPH1-1,Intersectin-1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding proline-rich region binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity molecular adaptor activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding proline-rich region binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity molecular adaptor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups blue light photoreceptor activity molecular transducer activity photoreceptor activity signaling receptor activity	protein localization localization cellular localization cellular macromolecule localization macromolecule localization cellular process establishment of protein localization nitrogen compound transport transport organic substance transport establishment of localization protein transport establishment of localization in cell intracellular transport protein localization localization cellular localization cellular macromolecule localization macromolecule localization cellular process establishment of protein localization nitrogen compound transport transport organic substance transport establishment of localization protein transport establishment of localization in cell intracellular transport vesicle-mediated transport endosomal transport cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process small GTPase-mediated signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction biological regulation regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication signal transduction synaptic vesicle endocytosis import into cell synaptic vesicle cycle presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle endosomal processing synaptic vesicle recycling via endosome synaptic vesicle recycling clathrin-dependent synaptic vesicle endocytosis clathrin-dependent endocytosis receptor-mediated endocytosis endocytosis secretion by cell exocytosis secretion export from cell phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process phosphorus metabolic process	cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium clathrin-coated pit membrane endomembrane system membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium clathrin-coated pit membrane endomembrane system membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle cytoplasm cytosol cell periphery plasma membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane neuron projection endosome intracellular vesicle recycling endosome cytoplasmic vesicle vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR001849	Pleckstrin homology domain	Domain
B, D	IPR000219	Dbl homology (DH) domain	Domain
B, D	IPR000261	EH domain	Domain
B, D	IPR036028	SH3-like domain superfamily	Homologous Superfamily
B, D	IPR000008	C2 domain	Domain
B, D	IPR011993	PH-like domain superfamily	Homologous Superfamily
B, D	IPR002048	EF-hand domain	Domain
B, D	IPR001331	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Conserved Site
B, D	IPR011992	EF-hand domain pair	Homologous Superfamily
B, D	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
B, D	IPR001452	SH3 domain	Domain
B, D	IPR035892	C2 domain superfamily	Homologous Superfamily
B, D	IPR035899	Dbl homology (DH) domain superfamily	Homologous Superfamily
B, D	IPR032140	Intersectin-1, AP2 binding region	Domain
B, D	IPR017441	Protein kinase, ATP binding site	Binding Site
B, D	IPR000014	PAS domain	Domain
B, D	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
B, D	IPR035965	PAS domain superfamily	Homologous Superfamily
B, D	IPR001610	PAC motif	Repeat
B, D	IPR000700	PAS-associated, C-terminal	Domain
B, D	IPR000719	Protein kinase domain	Domain
B, D	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	Pharos: Q15811	Down syndrome psoriasis prostate cancer Sjogren syndrome adenoma invasive ductal breast carcinoma malignant glioma osteosarcoma pilocytic astrocytoma Prostatic Neoplasms subependymal giant cell astrocytoma astrocytic tumor ductal breast carcinoma in situ large cell medulloblastoma MALT lymphoma Down syndrome psoriasis prostate cancer Sjogren syndrome adenoma invasive ductal breast carcinoma malignant glioma osteosarcoma pilocytic astrocytoma Prostatic Neoplasms subependymal giant cell astrocytoma astrocytic tumor ductal breast carcinoma in situ large cell medulloblastoma MALT lymphoma ovarian cancer primitive neuroectodermal tumor atypical teratoid rhabdoid tumor glioblastoma malignant ependymoma medulloblastoma Pick disease