5HW4
Crystal structure of Escherichia coli 16S rRNA methyltransferase RsmI in complex with AdoMet
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TP_methylase_C | e5hw4A1 | A: a+b two layers | X: Tetrapyrrole methylase C-terminal domain-like | H: Tetrapyrrole methylase C-terminal domain (From Topology) | T: Tetrapyrrole methylase C-terminal domain | F: TP_methylase_C | ECOD (1.6) |
A | TP_methylase_N | e5hw4A2 | A: a/b three-layered sandwiches | X: Tetrapyrrole methylase N-terminal domain (From Topology) | H: Tetrapyrrole methylase N-terminal domain (From Topology) | T: Tetrapyrrole methylase N-terminal domain | F: TP_methylase_N | ECOD (1.6) |
B | TP_methylase_C | e5hw4B2 | A: a+b two layers | X: Tetrapyrrole methylase C-terminal domain-like | H: Tetrapyrrole methylase C-terminal domain (From Topology) | T: Tetrapyrrole methylase C-terminal domain | F: TP_methylase_C | ECOD (1.6) |
B | TP_methylase_N | e5hw4B1 | A: a/b three-layered sandwiches | X: Tetrapyrrole methylase N-terminal domain (From Topology) | H: Tetrapyrrole methylase N-terminal domain (From Topology) | T: Tetrapyrrole methylase N-terminal domain | F: TP_methylase_N | ECOD (1.6) |
C | TP_methylase_C | e5hw4C2 | A: a+b two layers | X: Tetrapyrrole methylase C-terminal domain-like | H: Tetrapyrrole methylase C-terminal domain (From Topology) | T: Tetrapyrrole methylase C-terminal domain | F: TP_methylase_C | ECOD (1.6) |
C | TP_methylase_N | e5hw4C1 | A: a/b three-layered sandwiches | X: Tetrapyrrole methylase N-terminal domain (From Topology) | H: Tetrapyrrole methylase N-terminal domain (From Topology) | T: Tetrapyrrole methylase N-terminal domain | F: TP_methylase_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1010.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cobalt-precorrin-4 Transmethylase | domain 1 | CATH (4.3.0) |
A | 3.30.950.10 | Alpha Beta | 2-Layer Sandwich | Methyltransferase, Cobalt-precorrin-4 Transmethylase | Domain 2 | CATH (4.3.0) |
B | 3.40.1010.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cobalt-precorrin-4 Transmethylase | domain 1 | CATH (4.3.0) |
B | 3.30.950.10 | Alpha Beta | 2-Layer Sandwich | Methyltransferase, Cobalt-precorrin-4 Transmethylase | Domain 2 | CATH (4.3.0) |
C | 3.40.1010.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cobalt-precorrin-4 Transmethylase | domain 1 | CATH (4.3.0) |
C | 3.30.950.10 | Alpha Beta | 2-Layer Sandwich | Methyltransferase, Cobalt-precorrin-4 Transmethylase | Domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF23016 | RsmI C-terminal HTH domain (RsmI_C) | RsmI C-terminal HTH domain | This entry represents a small helical domain at the C-terminus of RsmI that folds into a typical three helical DNA/RNA binding bundle containing HTH motif. This domain is found in Ribosomal RNA small subunit methyltransferase I (RsmI) and related pro ... | Domain | |
PF00590 | Tetrapyrrole (Corrin/Porphyrin) Methylases (TP_methylase) | Tetrapyrrole (Corrin/Porphyrin) Methylases | This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function, including Swiss:P45528. This family includes the methylase Dipthine synthase. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018063 | SAM-dependent methyltransferase RsmI, conserved site | Conserved Site | |
IPR035996 | Tetrapyrrole methylase superfamily | Homologous Superfamily | |
IPR014777 | Tetrapyrrole methylase, subdomain 1 | Homologous Superfamily | |
IPR014776 | Tetrapyrrole methylase, subdomain 2 | Homologous Superfamily | |
IPR000878 | Tetrapyrrole methylase | Domain | |
IPR008189 | rRNA small subunit methyltransferase I | Family |