5HVK
Crystal structure of LIMK1 mutant D460N in complex with full-length cofilin-1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Actin depolymerizing proteins | 8038510 | 3000430 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8069271 | 3000066 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8069271 | 3000066 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Actin depolymerizing proteins | 8038510 | 3000430 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Cofilin_ADF | e5hvkB1 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Cofilin_ADF | ECOD (1.6) |
A | Pkinase_Tyr | e5hvkA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
C | Pkinase_Tyr | e5hvkC1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
D | Cofilin_ADF | e5hvkD1 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Cofilin_ADF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.20.10 | Alpha Beta | 3-Layer(aba) Sandwich | Severin | Severin | CATH (4.3.0) |
A | 3.30.200.20 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
A | 1.10.510.10 | Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase) | domain 1 | CATH (4.3.0) |
C | 3.30.200.20 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
C | 1.10.510.10 | Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase) | domain 1 | CATH (4.3.0) |
D | 3.40.20.10 | Alpha Beta | 3-Layer(aba) Sandwich | Severin | Severin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00241 | Cofilin/tropomyosin-type actin-binding protein (Cofilin_ADF) | Cofilin/tropomyosin-type actin-binding protein | Severs actin filaments and binds to actin monomers. | Domain | |
PF07714 | Protein tyrosine and serine/threonine kinase (PK_Tyr_Ser-Thr) | Protein tyrosine and serine/threonine kinase | Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosph ... | Domain | |
PF00241 | Cofilin/tropomyosin-type actin-binding protein (Cofilin_ADF) | Cofilin/tropomyosin-type actin-binding protein | Severs actin filaments and binds to actin monomers. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029006 | ADF-H/Gelsolin-like domain superfamily | Homologous Superfamily | |
IPR017904 | ADF/Cofilin | Family | |
IPR002108 | Actin-depolymerising factor homology domain | Domain | |
IPR017441 | Protein kinase, ATP binding site | Binding Site | |
IPR050940 | Actin-regulating Serine/Threonine Kinase | Family | |
IPR000719 | Protein kinase domain | Domain | |
IPR001781 | Zinc finger, LIM-type | Domain | |
IPR001245 | Serine-threonine/tyrosine-protein kinase, catalytic domain | Domain | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR001478 | PDZ domain | Domain | |
IPR029006 | ADF-H/Gelsolin-like domain superfamily | Homologous Superfamily | |
IPR017904 | ADF/Cofilin | Family | |
IPR002108 | Actin-depolymerising factor homology domain | Domain |