5HT9 | pdb_00005ht9

Crystal structure of M-crystallin in the presence of nickel

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5ht9b_	All beta proteins	gamma-Crystallin-like	gamma-Crystallin-like	automated matches	automated matches	(Methanosarcina acetivorans C2A ) [TaxId: 188937 ],	SCOPe (2.08)
A	d5ht9a_	All beta proteins	gamma-Crystallin-like	gamma-Crystallin-like	automated matches	automated matches	(Methanosarcina acetivorans C2A ) [TaxId: 188937 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	gamma-Crystallin-like	8072748	3001138	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	gamma-Crystallin-like	8072748	3001138	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ORC4_C	e5ht9B1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
A	ORC4_C	e5ht9A1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.20.10	Mainly Beta	Sandwich	Gamma-B Crystallin	domain 1	CATH (4.3.0)
A	2.60.20.10	Mainly Beta	Sandwich	Gamma-B Crystallin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00030	Beta/Gamma crystallin (Crystall)	Beta/Gamma crystallin	The alignment comprises two Greek key motifs since the similarity between them is very low.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Beta/gama crystallin family protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001064	Beta/gamma crystallin	Domain
A, B	IPR011024	Gamma-crystallin-like	Homologous Superfamily
A, B	IPR050252	Beta/Gamma-Crystallin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.