5HSW | pdb_00005hsw

KSHV SOX RNA complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASulfotransfer_2e5hswA1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: ferredoxin-like domain in periplasmic region of MacBT: SH3F: Sulfotransfer_2ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.120.860 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Herpesvirus alkaline exonuclease, N-terminal domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
RNA (5'-R(P*UP*CP*UP*UP*GP*AP*AP*GP*CP*AP*GP*CP*UP*UP*CP*CP*AP*G)-3')---
ORF 37 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011335Restriction endonuclease type II-likeHomologous Superfamily
IPR034720Viral alkaline exonucleaseFamily
IPR001616Alphaherpesvirus alkaline exonucleaseFamily