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 5HQM | pdb_00005hqm

Structure function studies of R. palustris RubisCO (R. palustris/R. rubrum chimera)

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5hqmb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Rhodopseudomonas palustris ) [TaxId: 1076 ], (Rhodospirillum rubrum ) [TaxId: 1085 ], SCOPe (2.08)
Bd5hqmb1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Rhodopseudomonas palustris ) [TaxId: 1076 ], (Rhodospirillum rubrum ) [TaxId: 1085 ], SCOPe (2.08)
Ad5hqma2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Rhodopseudomonas palustris ) [TaxId: 1076 ], (Rhodospirillum rubrum ) [TaxId: 1085 ], SCOPe (2.08)
Ad5hqma1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Rhodopseudomonas palustris ) [TaxId: 1076 ], (Rhodospirillum rubrum ) [TaxId: 1085 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BWD40e5hqmB1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: profilin-likeT: C-terminal domain in DHH phosphoesterasesF: WD40ECOD (v295.2)
AWD40e5hqmA1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: profilin-likeT: C-terminal domain in DHH phosphoesterasesF: WD40ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
B3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Ribulose bisphosphate carboxylase (R. palustris/R. rubrum chimera),Ribulose bisphosphate carboxylase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
A, B
IPR020871Ribulose bisphosphate carboxylase large subunit, type IIFamily
A, B
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
A, B
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
A, B
IPR033966RuBisCOFamily
A, B
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
A, B
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
A, B
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
A, B
IPR020871Ribulose bisphosphate carboxylase large subunit, type IIFamily
A, B
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
A, B
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
A, B
IPR033966RuBisCOFamily
A, B
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
A, B
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain