5HLH | pdb_00005hlh

Crystal structure of the overoxidized AbfR bound to DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth H]	Flav_NS3-hel_C	e5hlhH1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)
O [auth G]	Flav_NS3-hel_C	e5hlhG1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)
N [auth F]	Flav_NS3-hel_C	e5hlhF1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)
M [auth E]	Flav_NS3-hel_C	e5hlhE1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)
L [auth D]	Flav_NS3-hel_C	e5hlhD1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)
K [auth C]	Flav_NS3-hel_C	e5hlhC1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)
J [auth B]	Flav_NS3-hel_C	e5hlhB1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)
I [auth A]	Flav_NS3-hel_C	e5hlhA1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: Flav_NS3-hel_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P [auth H]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
O [auth G]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
N [auth F]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
M [auth E]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
L [auth D]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
K [auth C]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
J [auth B]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
I [auth A]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	PF22381	Transcriptional regulator SarA/Rot (Staph_reg_Sar_Rot)	Transcriptional regulator SarA/Rot	This entry represents transcriptional regulatory proteins in Staphylococcal species including SarA and Rot [1-5]. Sar is a global regulator with both positive and negative effects that controls expression of several virulence factors and biofilm form ...	This entry represents transcriptional regulatory proteins in Staphylococcal species including SarA and Rot [1-5]. Sar is a global regulator with both positive and negative effects that controls expression of several virulence factors and biofilm formation process in a cell density-dependent manner. Rot plays a key role in regulating S. aureus virulence through activation or repression of promoters that control expression of a large number of critical virulence factors [5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	MarR family transcriptional regulator	DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	response to stimulus response to stress	cellular anatomical structure intracellular anatomical structure cytoplasm
A [auth I], B [auth J], C [auth K], D [auth L], E [auth M], A [auth I], B [auth J], C [auth K], D [auth L], E [auth M], F [auth N], G [auth O], H [auth P]	DNA (5'-D(TPAPAPCPTPCPAPAPTPCPGPCPGPCPGPCPGPAPTPTPGPAPGPT)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR000835	MarR-type HTH domain	Domain
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR055166	Transcriptional regulator SarA/SarZ/Rot-like, helix-turn-helix domain	Domain
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR039422	Transcription regulators MarR/SlyA-like	Family
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	OCS	Parent Component: CYS RESID: AA0556 PSI-MOD : L-cysteic acid (L-cysteine sulfonic acid) MOD:00460

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.