Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| JB [auth 2D] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8033195 | 3000135 | SCOP2B (2022-06-29) |
| JB [auth 2D] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033194 | 3000334 | SCOP2B (2022-06-29) |
| D [auth 1D] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033194 | 3000334 | SCOP2B (2022-06-29) |
| D [auth 1D] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8033195 | 3000135 | SCOP2B (2022-06-29) |
| KB [auth 2E] | SCOP2B Superfamily | Translational proteins | 8033197 | 3000811 | SCOP2B (2022-06-29) |
| E [auth 1E] | SCOP2B Superfamily | Translational proteins | 8033197 | 3000811 | SCOP2B (2022-06-29) |
| LB [auth 2F] | SCOP2B Superfamily | Ribosomal protein L4 | 8033198 | 3001146 | SCOP2B (2022-06-29) |
| F [auth 1F] | SCOP2B Superfamily | Ribosomal protein L4 | 8033198 | 3001146 | SCOP2B (2022-06-29) |
| NB [auth 2H] | SCOP2B Superfamily | Ribosomal protein L6 | 8033202 | 3000724 | SCOP2B (2022-06-29) |
| NB [auth 2H] | SCOP2B Superfamily | Ribosomal protein L6 | 8033203 | 3000724 | SCOP2B (2022-06-29) |
| H [auth 1H] | SCOP2B Superfamily | Ribosomal protein L6 | 8033202 | 3000724 | SCOP2B (2022-06-29) |
| H [auth 1H] | SCOP2B Superfamily | Ribosomal protein L6 | 8033203 | 3000724 | SCOP2B (2022-06-29) |
| QB [auth 2L] | SCOP2B Superfamily | Ribosomal protein L13 | 8033205 | 3001134 | SCOP2B (2022-06-29) |
| K [auth 1L] | SCOP2B Superfamily | Ribosomal protein L13 | 8033205 | 3001134 | SCOP2B (2022-06-29) |
| RB [auth 2M] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8042936 | 3000433 | SCOP2B (2022-06-29) |
| L [auth 1M] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8042936 | 3000433 | SCOP2B (2022-06-29) |
| SB [auth 2N] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8033207 | 3001045 | SCOP2B (2022-06-29) |
| M [auth 1N] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8033207 | 3001045 | SCOP2B (2022-06-29) |
| TB [auth 2O] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8043627 | 3000884 | SCOP2B (2022-06-29) |
| N [auth 1O] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8043627 | 3000884 | SCOP2B (2022-06-29) |
| UB [auth 2P] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8032744 | 3000995 | SCOP2B (2022-06-29) |
| O [auth 1P] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8032744 | 3000995 | SCOP2B (2022-06-29) |
| VB [auth 2Q] | SCOP2B Superfamily | Translational machinery components | 8033211 | 3000571 | SCOP2B (2022-06-29) |
| P [auth 1Q] | SCOP2B Superfamily | Translational machinery components | 8033211 | 3000571 | SCOP2B (2022-06-29) |
| WB [auth 2R] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033214 | 3000334 | SCOP2B (2022-06-29) |
| Q [auth 1R] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033214 | 3000334 | SCOP2B (2022-06-29) |
| XB [auth 2S] | SCOP2B Superfamily | Ribosomal protein L20 | 8033216 | 3000563 | SCOP2B (2022-06-29) |
| R [auth 1S] | SCOP2B Superfamily | Ribosomal protein L20 | 8033216 | 3000563 | SCOP2B (2022-06-29) |
| YB [auth 2T] | SCOP2B Superfamily | l21p-like | 8033218 | 3002005 | SCOP2B (2022-06-29) |
| S [auth 1T] | SCOP2B Superfamily | l21p-like | 8033218 | 3002005 | SCOP2B (2022-06-29) |
| ZB [auth 2U] | SCOP2B Superfamily | Ribosomal protein L22 | 8033220 | 3001078 | SCOP2B (2022-06-29) |
| T [auth 1U] | SCOP2B Superfamily | Ribosomal protein L22 | 8033220 | 3001078 | SCOP2B (2022-06-29) |
| U [auth 1V] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8033219 | 3000210 | SCOP2B (2022-06-29) |
| AC [auth 2V] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8033219 | 3000210 | SCOP2B (2022-06-29) |
| V [auth 1W] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033223 | 3000334 | SCOP2B (2022-06-29) |
| BC [auth 2W] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033223 | 3000334 | SCOP2B (2022-06-29) |
| X [auth 1Y] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8041210 | 3000539 | SCOP2B (2022-06-29) |
| DC [auth 2Y] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8041210 | 3000539 | SCOP2B (2022-06-29) |
| Y [auth 1Z] | SCOP2B Superfamily | L28p-like | 8042932 | 3001966 | SCOP2B (2022-06-29) |
| EC [auth 2Z] | SCOP2B Superfamily | L28p-like | 8042932 | 3001966 | SCOP2B (2022-06-29) |
| Z [auth 10] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8042933 | 3000713 | SCOP2B (2022-06-29) |
| FC [auth 20] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8042933 | 3000713 | SCOP2B (2022-06-29) |
| HC [auth 22] | SCOP2B Superfamily | L28p-like | 8033189 | 3001966 | SCOP2B (2022-06-29) |
| BA [auth 12] | SCOP2B Superfamily | L28p-like | 8033189 | 3001966 | SCOP2B (2022-06-29) |
| IC [auth 23] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8033190 | 3001320 | SCOP2B (2022-06-29) |
| CA [auth 13] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8033190 | 3001320 | SCOP2B (2022-06-29) |
| JC [auth 24] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8033191 | 3001320 | SCOP2B (2022-06-29) |
| DA [auth 14] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8033191 | 3001320 | SCOP2B (2022-06-29) |
| LC [auth 26] | SCOP2B Superfamily | L35p-like | 8033192 | 3000790 | SCOP2B (2022-06-29) |
| FA [auth 16] | SCOP2B Superfamily | L35p-like | 8033192 | 3000790 | SCOP2B (2022-06-29) |
| OC [auth 2b] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8044010 | 3001397 | SCOP2B (2022-06-29) |
| IA [auth 1b] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8044010 | 3001397 | SCOP2B (2022-06-29) |
| PC [auth 2c] | SCOP2B Superfamily | Ribosomal protein S3 C-terminal domain | 8044012 | 3001053 | SCOP2B (2022-06-29) |
| PC [auth 2c] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8044011 | 3001043 | SCOP2B (2022-06-29) |
| JA [auth 1c] | SCOP2B Superfamily | Ribosomal protein S3 C-terminal domain | 8044012 | 3001053 | SCOP2B (2022-06-29) |
| JA [auth 1c] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8044011 | 3001043 | SCOP2B (2022-06-29) |
| QC [auth 2d] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8044014 | 3001473 | SCOP2B (2022-06-29) |
| KA [auth 1d] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8044014 | 3001473 | SCOP2B (2022-06-29) |
| RC [auth 2e] | SCOP2B Superfamily | dsRNA-binding domain-like | 8044017 | 3000985 | SCOP2B (2022-06-29) |
| RC [auth 2e] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8044015 | 3000100 | SCOP2B (2022-06-29) |
| LA [auth 1e] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8044015 | 3000100 | SCOP2B (2022-06-29) |
| LA [auth 1e] | SCOP2B Superfamily | dsRNA-binding domain-like | 8044017 | 3000985 | SCOP2B (2022-06-29) |
| TC [auth 2g] | SCOP2B Superfamily | Ribosomal protein S7 | 8033523 | 3000799 | SCOP2B (2022-06-29) |
| NA [auth 1g] | SCOP2B Superfamily | Ribosomal protein S7 | 8033523 | 3000799 | SCOP2B (2022-06-29) |
| VC [auth 2i] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037678 | 3000100 | SCOP2B (2022-06-29) |
| PA [auth 1i] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037678 | 3000100 | SCOP2B (2022-06-29) |
| WC [auth 2j] | SCOP2B Superfamily | Ribosomal protein S10 | 8044019 | 3001336 | SCOP2B (2022-06-29) |
| QA [auth 1j] | SCOP2B Superfamily | Ribosomal protein S10 | 8044019 | 3001336 | SCOP2B (2022-06-29) |
| XC [auth 2k] | SCOP2B Superfamily | Translational machinery components | 8044020 | 3000571 | SCOP2B (2022-06-29) |
| RA [auth 1k] | SCOP2B Superfamily | Translational machinery components | 8044020 | 3000571 | SCOP2B (2022-06-29) |
| YC [auth 2l] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044021 | 3000135 | SCOP2B (2022-06-29) |
| SA [auth 1l] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044021 | 3000135 | SCOP2B (2022-06-29) |
| ZC [auth 2m] | SCOP2B Superfamily | S13-like H2TH domain | 8003708 | 3000053 | SCOP2B (2022-06-29) |
| TA [auth 1m] | SCOP2B Superfamily | S13-like H2TH domain | 8003708 | 3000053 | SCOP2B (2022-06-29) |
| UA [auth 1n] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052585 | 3000068 | SCOP2B (2022-06-29) |
| AD [auth 2n] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052585 | 3000068 | SCOP2B (2022-06-29) |
| WA [auth 1p] | SCOP2B Superfamily | Ribosomal protein S16 | 8044025 | 3000680 | SCOP2B (2022-06-29) |
| CD [auth 2p] | SCOP2B Superfamily | Ribosomal protein S16 | 8044025 | 3000680 | SCOP2B (2022-06-29) |
| XA [auth 1q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044026 | 3000135 | SCOP2B (2022-06-29) |
| DD [auth 2q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044026 | 3000135 | SCOP2B (2022-06-29) |
| YA [auth 1r] | SCOP2B Superfamily | Ribosomal protein S18 | 8044028 | 3001191 | SCOP2B (2022-06-29) |
| ED [auth 2r] | SCOP2B Superfamily | Ribosomal protein S18 | 8044028 | 3001191 | SCOP2B (2022-06-29) |
| ZA [auth 1s] | SCOP2B Superfamily | Ribosomal protein S19 | 8044027 | 3000686 | SCOP2B (2022-06-29) |
| FD [auth 2s] | SCOP2B Superfamily | Ribosomal protein S19 | 8044027 | 3000686 | SCOP2B (2022-06-29) |
| GD [auth 2t] | SCOP2B Superfamily | Ribosomal protein S20 | 8044029 | 3001362 | SCOP2B (2022-06-29) |
| AB [auth 1t] | SCOP2B Superfamily | Ribosomal protein S20 | 8044029 | 3001362 | SCOP2B (2022-06-29) |
| ID [auth 2z] | SCOP2B Superfamily | L9 N-domain-like | 8042935 | 3000338 | SCOP2B (2022-06-29) |
| CB [auth 1z] | SCOP2B Superfamily | L9 N-domain-like | 8042935 | 3000338 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| IB [auth 2C] | ThiF | e5hau2C1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| C [auth 1C] | ThiF | e5hau1C1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| JB [auth 2D] | BAH | e5hau2D1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| D [auth 1D] | BAH | e5hau1D1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| KB [auth 2E] | PemK_toxin | e5hau2E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| E [auth 1E] | PemK_toxin | e5hau1E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| LB [auth 2F] | BAH | e5hau2F1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| F [auth 1F] | BAH | e5hau1F1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| MB [auth 2G] | BAH | e5hau2G1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| G [auth 1G] | BAH | e5hau1G1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| NB [auth 2H] | BAH | e5hau2H1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| H [auth 1H] | BAH | e5hau1H1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| OB [auth 2J] | BAH | e5hau2J1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| I [auth 1J] | ThiF | e5hau1J1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| PB [auth 2K] | ThiF | e5hau2K1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| J [auth 1K] | ThiF | e5hau1K1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| QB [auth 2L] | BAH | e5hau2L1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| K [auth 1L] | BAH | e5hau1L1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| RB [auth 2M] | BAH | e5hau2M1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| L [auth 1M] | BAH | e5hau1M1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| SB [auth 2N] | PemK_toxin | e5hau2N1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| M [auth 1N] | PemK_toxin | e5hau1N1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| TB [auth 2O] | PemK_toxin | e5hau2O1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| N [auth 1O] | PemK_toxin | e5hau1O1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| UB [auth 2P] | BAH | e5hau2P1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| O [auth 1P] | BAH | e5hau1P1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| VB [auth 2Q] | PemK_toxin | e5hau2Q1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| P [auth 1Q] | PemK_toxin | e5hau1Q1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| WB [auth 2R] | Peptidase_C78 | e5hau2R1 | A: beta barrels | X: Repetitive alpha hairpins | H: ferredoxin-like domain in periplasmic region of MacB | T: ferredoxin-like domain in periplasmic region of MacB | F: Peptidase_C78 | ECOD (v294.2) |
| Q [auth 1R] | Peptidase_C78 | e5hau1R1 | A: beta barrels | X: Repetitive alpha hairpins | H: ferredoxin-like domain in periplasmic region of MacB | T: ferredoxin-like domain in periplasmic region of MacB | F: Peptidase_C78 | ECOD (v294.2) |
| XB [auth 2S] | BAH | e5hau2S1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| R [auth 1S] | BAH | e5hau1S1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| YB [auth 2T] | BAH | e5hau2T1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| S [auth 1T] | BAH | e5hau1T1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| ZB [auth 2U] | BAH | e5hau2U1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| T [auth 1U] | BAH | e5hau1U1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| U [auth 1V] | BAH | e5hau1V1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| AC [auth 2V] | BAH | e5hau2V1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| V [auth 1W] | BAH | e5hau1W1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| BC [auth 2W] | BAH | e5hau2W1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| W [auth 1X] | BAH | e5hau1X1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| CC [auth 2X] | BAH | e5hau2X1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| X [auth 1Y] | BAH | e5hau1Y1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| DC [auth 2Y] | BAH | e5hau2Y1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| Y [auth 1Z] | BAH | e5hau1Z1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| EC [auth 2Z] | BAH | e5hau2Z1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| Z [auth 10] | BAH | e5hau101 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| FC [auth 20] | BAH | e5hau201 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| GC [auth 21] | BAH | e5hau211 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| AA [auth 11] | BAH | e5hau111 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| HC [auth 22] | BAH | e5hau221 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| BA [auth 12] | BAH | e5hau121 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| IC [auth 23] | BAH | e5hau231 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| CA [auth 13] | BAH | e5hau131 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| JC [auth 24] | PemK_toxin | e5hau241 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| DA [auth 14] | PemK_toxin | e5hau141 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| KC [auth 25] | BAH | e5hau251 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| EA [auth 15] | BAH | e5hau151 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| LC [auth 26] | BAH | e5hau261 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| FA [auth 16] | BAH | e5hau161 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| MC [auth 27] | BAH | e5hau271 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| GA [auth 17] | BAH | e5hau171 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| OC [auth 2b] | ThiF | e5hau2b1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| IA [auth 1b] | ThiF | e5hau1b1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| PC [auth 2c] | ThiF | e5hau2c1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| JA [auth 1c] | ThiF | e5hau1c1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| QC [auth 2d] | BAH | e5hau2d1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| KA [auth 1d] | BAH | e5hau1d1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| RC [auth 2e] | BAH | e5hau2e1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| LA [auth 1e] | BAH | e5hau1e1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| SC [auth 2f] | BAH | e5hau2f1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| MA [auth 1f] | BAH | e5hau1f1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| TC [auth 2g] | BAH | e5hau2g1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| NA [auth 1g] | BAH | e5hau1g1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| UC [auth 2h] | BAH | e5hau2h1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| OA [auth 1h] | BAH | e5hau1h1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| VC [auth 2i] | BAH | e5hau2i1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| PA [auth 1i] | BAH | e5hau1i1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| WC [auth 2j] | BAH | e5hau2j1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| QA [auth 1j] | BAH | e5hau1j1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| XC [auth 2k] | BAH | e5hau2k1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| RA [auth 1k] | BAH | e5hau1k1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| YC [auth 2l] | BAH | e5hau2l1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| SA [auth 1l] | BAH | e5hau1l1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| ZC [auth 2m] | BAH | e5hau2m1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| TA [auth 1m] | BAH | e5hau1m1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| UA [auth 1n] | BAH | e5hau1n1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| AD [auth 2n] | BAH | e5hau2n1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| VA [auth 1o] | BAH | e5hau1o1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| BD [auth 2o] | BAH | e5hau2o1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| WA [auth 1p] | BAH | e5hau1p1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| CD [auth 2p] | BAH | e5hau2p1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| XA [auth 1q] | BAH | e5hau1q1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| DD [auth 2q] | BAH | e5hau2q1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| YA [auth 1r] | BAH | e5hau1r1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| ED [auth 2r] | BAH | e5hau2r1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| ZA [auth 1s] | BAH | e5hau1s1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| FD [auth 2s] | BAH | e5hau2s1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| GD [auth 2t] | BAH | e5hau2t1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| AB [auth 1t] | BAH | e5hau1t1 | A: beta barrels | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.2) |
| ID [auth 2z] | ThiF | e5hau2z1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
| CB [auth 1z] | ThiF | e5hau1z1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: ThiF | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth 1B], HB [auth 2B] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| C [auth 1C], IB [auth 2C] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| C [auth 1C], IB [auth 2C] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| C [auth 1C], IB [auth 2C] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| D [auth 1D], JB [auth 2D] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| D [auth 1D], JB [auth 2D] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| D [auth 1D], JB [auth 2D] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| D [auth 1D], JB [auth 2D] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| E [auth 1E], KB [auth 2E] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| E [auth 1E], KB [auth 2E] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| E [auth 1E], KB [auth 2E] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| F [auth 1F], LB [auth 2F] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| F [auth 1F], LB [auth 2F] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| G [auth 1G], MB [auth 2G] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| G [auth 1G], MB [auth 2G] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| G [auth 1G], MB [auth 2G] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| H [auth 1H], NB [auth 2H] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| H [auth 1H], NB [auth 2H] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| I [auth 1J], OB [auth 2J] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| J [auth 1K], PB [auth 2K] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| K [auth 1L], QB [auth 2L] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| K [auth 1L], QB [auth 2L] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| L [auth 1M], RB [auth 2M] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| L [auth 1M], RB [auth 2M] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| M [auth 1N], SB [auth 2N] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| M [auth 1N], SB [auth 2N] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| N [auth 1O], TB [auth 2O] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| N [auth 1O], TB [auth 2O] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| O [auth 1P], UB [auth 2P] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| O [auth 1P], UB [auth 2P] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| P [auth 1Q], VB [auth 2Q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| Q [auth 1R], WB [auth 2R] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| Q [auth 1R], WB [auth 2R] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| R [auth 1S], XB [auth 2S] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| R [auth 1S], XB [auth 2S] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| S [auth 1T], YB [auth 2T] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| T [auth 1U], ZB [auth 2U] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| AC [auth 2V], U [auth 1V] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| BC [auth 2W], V [auth 1W] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| BC [auth 2W], V [auth 1W] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| CC [auth 2X], W [auth 1X] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
| CC [auth 2X], W [auth 1X] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| EC [auth 2Z], Y [auth 1Z] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| EC [auth 2Z], Y [auth 1Z] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| FC [auth 20], Z [auth 10] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| AA [auth 11], GC [auth 21] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| BA [auth 12], HC [auth 22] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
| CA [auth 13], IC [auth 23] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| DA [auth 14], JC [auth 24] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| EA [auth 15], KC [auth 25] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| FA [auth 16], LC [auth 26] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| GA [auth 17], MC [auth 27] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |














