5H7S
Structural basis of the flanking zinc-finger motifs crucial for the E3 ligase activity of the LNX1 RING domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF00240 | e5h7sE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D [auth F] | PF00240 | e5h7sF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
E [auth B] | PF00097 | e5h7sB1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF00097 | ECOD (1.6) |
B [auth D] | PF00097 | e5h7sD1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF00097 | ECOD (1.6) |
C [auth A] | PF00179 | e5h7sA1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: PF00179 | ECOD (1.6) |
F [auth C] | PF00179 | e5h7sC1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: PF00179 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth B] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
B [auth D] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
C [auth A] | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
F [auth C] | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], D [auth F] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
B [auth D], E [auth B] | PF00097 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) | Zinc finger, C3HC4 type (RING finger) | The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ... | Domain |
C [auth A], F [auth C] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E], D [auth F] | IPR019954 | Ubiquitin conserved site | Conserved Site |
A [auth E], D [auth F] | IPR000626 | Ubiquitin-like domain | Domain |
A [auth E], D [auth F] | IPR019956 | Ubiquitin domain | Domain |
A [auth E], D [auth F] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
B [auth D], E [auth B] | IPR018957 | Zinc finger, C3HC4 RING-type | Domain |
B [auth D], E [auth B] | IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site |
B [auth D], E [auth B] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
B [auth D], E [auth B] | IPR036034 | PDZ superfamily | Homologous Superfamily |
B [auth D], E [auth B] | IPR001478 | PDZ domain | Domain |
B [auth D], E [auth B] | IPR001841 | Zinc finger, RING-type | Domain |
C [auth A], F [auth C] | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily |
C [auth A], F [auth C] | IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain |
C [auth A], F [auth C] | IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |