5H5J | pdb_00005h5j

Complex between ferredoxin and ferredoxin-NADP+ reductase from maize root

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5h5jb_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	2Fe-2S ferredoxin-related	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
C	d5h5jc1	All beta proteins	Reductase/isomerase/elongation factor common domain	Riboflavin synthase domain-like	automated matches	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
C	d5h5jc2	Alpha and beta proteins (a/b)	Ferredoxin reductase-like, C-terminal NADP-linked domain	Ferredoxin reductase-like, C-terminal NADP-linked domain	automated matches	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
A	d5h5ja1	All beta proteins	Reductase/isomerase/elongation factor common domain	Riboflavin synthase domain-like	automated matches	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
A	d5h5ja2	Alpha and beta proteins (a/b)	Ferredoxin reductase-like, C-terminal NADP-linked domain	Ferredoxin reductase-like, C-terminal NADP-linked domain	automated matches	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Sulfotransfer_2	e5h5jB1	A: a/b three-layered sandwiches	X: MocoBD/DmpA-related	H: ferredoxin-like domain in periplasmic region of MacB	T: SH3	F: Sulfotransfer_2	ECOD (v294.1)
C	Sulfotransfer_2	e5h5jC1	A: a/b three-layered sandwiches	X: MocoBD/DmpA-related	H: ferredoxin-like domain in periplasmic region of MacB	T: SH3	F: Sulfotransfer_2	ECOD (v294.1)
A	Sulfotransfer_2	e5h5jA1	A: a/b three-layered sandwiches	X: MocoBD/DmpA-related	H: ferredoxin-like domain in periplasmic region of MacB	T: SH3	F: Sulfotransfer_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.40.30.10	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
C	3.40.50.80	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module	CATH (4.3.0)
A	2.40.30.10	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
A	3.40.50.80	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF00111	2Fe-2S iron-sulfur cluster binding domain (Fer2)	2Fe-2S iron-sulfur cluster binding domain		Domain
A, C	PF00175	Oxidoreductase NAD-binding domain (NAD_binding_1)	Oxidoreductase NAD-binding domain	Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Ferredoxin-3, chloroplastic	iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding electron transfer activity cation binding ion binding metal ion binding	electron transport chain metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle etioplast intracellular anatomical structure plastid etioplast stroma intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure plastid stroma organelle cytoplasm chloroplast chloroplast stroma
A, C	Ferredoxin--NADP reductase	oxidoreductase activity ferredoxin-[NAD(P)H] reductase activity ferredoxin-NADP+ reductase activity oxidoreductase activity, acting on iron-sulfur proteins as donors oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane protein-containing complex intracellular anatomical structure plastid membrane protein complex organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle chloroplast thylakoid membrane membrane-bounded organelle plastid membrane protein-containing complex intracellular anatomical structure plastid membrane protein complex organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid membrane protein complex organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
B	IPR010241	Ferredoxin [2Fe-2S], plant and bacteria	Domain
B	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
B	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
B	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	Binding Site
A, C	IPR017938	Riboflavin synthase-like beta-barrel	Homologous Superfamily
A, C	IPR001709	Flavoprotein pyridine nucleotide cytochrome reductase	Domain
A, C	IPR001433	Oxidoreductase FAD/NAD(P)-binding	Domain
A, C	IPR017927	FAD-binding domain, ferredoxin reductase-type	Domain
A, C	IPR035442	Ferredoxin--NADP reductase, plant and Cyanobacteria type	Family
A, C	IPR015701	Ferredoxin--NADP reductase	Family
A, C	IPR039261	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.