Annotations: 5H0S

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	PF21416	e5h0sB2	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF21416	ECOD (1.6)
A [auth B]	PF20855	e5h0sB1	A: a/b three-layered sandwiches	X: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	H: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	T: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein	F: PF20855	ECOD (1.6)
B [auth C]	PF21416	e5h0sC1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF21416	ECOD (1.6)
B [auth C]	PF20855	e5h0sC2	A: a/b three-layered sandwiches	X: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	H: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	T: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein	F: PF20855	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C]	PF20855	CPV Capsid shell protein VP1, small protrusion domain (VP1_protrusion)	CPV Capsid shell protein VP1, small protrusion domain	This domain is found in Capsid shell protein VP1 from Cytoplasmic polyhedrosis virus (CPV). VP1, one of the three major capsid proteins of CPV, has an overall thin-plate-like shape similar to its counterparts in other reoviruses except for a protrusi ...	This domain is found in Capsid shell protein VP1 from Cytoplasmic polyhedrosis virus (CPV). VP1, one of the three major capsid proteins of CPV, has an overall thin-plate-like shape similar to its counterparts in other reoviruses except for a protrusion domain on the outer capsid surface, which is unique in single-layered cypoviruses [1].	Domain
A [auth B], B [auth C]	PF21416	Inner layer core protein VP1-like, C-terminal (VP1-like_C)	Inner layer core protein VP1-like, C-terminal	This entry includes capsid proteins from cypoviruses which form the icosahedral capsid through self-assembly (they are also known as inner layer core proteins). The capsid encapsulates and protects the genomic RNA. These viruses encode VP1, VP3 and V ...	This entry includes capsid proteins from cypoviruses which form the icosahedral capsid through self-assembly (they are also known as inner layer core proteins). The capsid encapsulates and protects the genomic RNA. These viruses encode VP1, VP3 and VP5 as major capsid proteins, encoded by RNA segment 1 and 3 in the case of VP1 and VP3, respectively, whereas RNA segment encoding VP5 is still unclear. This entry represents the C-terminal domain of capsid proteins from cypovirusus [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth C]	VP1	-	-	viral capsid icosahedral viral capsid virion component viral inner capsid T=2 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C]	IPR049421	Capsid protein VP1, small protrusion domain	Domain
A [auth B], B [auth C]	IPR049422	Capsid protein VP1/VP3, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.