5GYR | pdb_00005gyr

Tetrameric Allochromatium vinosum cytochrome c'

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5gyra_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
B	d5gyrb_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
C [auth E]	d5gyre_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
D [auth F]	d5gyrf_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
E [auth I]	d5gyri_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
F [auth J]	d5gyrj_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
G [auth M]	d5gyrm_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
H [auth N]	d5gyrn_	All alpha proteins	Four-helical up-and-down bundle	Cytochromes	Cytochrome c'-like	Cytochrome c'	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)
D [auth F]	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)
E [auth I]	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)
F [auth J]	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)
G [auth M]	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)
H [auth N]	SCOP2B Superfamily	Cytochromes	8036879	3001526	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ORC4_C	e5gyrA1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
B	ORC4_C	e5gyrB1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
C [auth E]	ORC4_C	e5gyrE1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
D [auth F]	ORC4_C	e5gyrF1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
E [auth I]	ORC4_C	e5gyrI1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
F [auth J]	ORC4_C	e5gyrJ1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
G [auth M]	ORC4_C	e5gyrM1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)
H [auth N]	ORC4_C	e5gyrN1	A: alpha bundles	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: ORC4_C	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth E], D [auth F], E [auth I], A, B, C [auth E], D [auth F], E [auth I], F [auth J], G [auth M], H [auth N]	PF01322	Cytochrome C' (Cytochrom_C_2)	Cytochrome C'		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth E], D [auth F], E [auth I], A, B, C [auth E], D [auth F], E [auth I], F [auth J], G [auth M], H [auth N]	Cytochrome c'	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	electron transport chain metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth E], D [auth F], E [auth I], A, B, C [auth E], D [auth F], E [auth I], F [auth J], G [auth M], H [auth N]	IPR015984	Cytochrome c prime, subgroup	Family
A, B, C [auth E], D [auth F], E [auth I], A, B, C [auth E], D [auth F], E [auth I], F [auth J], G [auth M], H [auth N]	IPR002321	Cytochrome c, class II	Family
A, B, C [auth E], D [auth F], E [auth I], A, B, C [auth E], D [auth F], E [auth I], F [auth J], G [auth M], H [auth N]	IPR012127	Cytochrome c prime	Family
A, B, C [auth E], D [auth F], E [auth I], A, B, C [auth E], D [auth F], E [auth I], F [auth J], G [auth M], H [auth N]	IPR010980	Cytochrome c/b562	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.