5GX6 | pdb_00005gx6

Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-4 position of GalNAc

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyType 2 solute binding protein-like 8088924 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like 8088924 3000083 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyType 2 solute binding protein-like 8088924 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPhage_integrasee5gx6C1 A: a/b three-layered sandwichesX: Carbon-nitrogen hydrolase-likeH: SSHS domain in CRISPR-associated endonuclease Cas9T: SSHS domain in CRISPR-associated endonuclease Cas9F: Phage_integraseECOD (v294.1)
BPhage_integrasee5gx6B1 A: a/b three-layered sandwichesX: Carbon-nitrogen hydrolase-likeH: SSHS domain in CRISPR-associated endonuclease Cas9T: SSHS domain in CRISPR-associated endonuclease Cas9F: Phage_integraseECOD (v294.1)
APhage_integrasee5gx6A1 A: a/b three-layered sandwichesX: Carbon-nitrogen hydrolase-likeH: SSHS domain in CRISPR-associated endonuclease Cas9T: SSHS domain in CRISPR-associated endonuclease Cas9F: Phage_integraseECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
B3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF13416Bacterial extracellular solute-binding protein (SBP_bac_8)Bacterial extracellular solute-binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Extracellular solute-binding protein family 1 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR050490Bacterial solute-binding protein 1Family
A, B, C
IPR006059Bacterial-type extracellular solute-binding proteinFamily