5GUI | pdb_00005gui

Crystal structure of the N-terminal Domain of Caseinolytic protease associated chaperone ClpC1 from Arabidopsis thaliana

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Double Clp-N motif	8082866	4002527	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Double Clp-N motif	8082867	3001383	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TTL, ATPgrasp_YheCD	e5guiA1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.1780.10	Mainly Alpha	Orthogonal Bundle	Double Clp-N motif	Clp, N-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02861	Clp repeat (R) N-terminal domain (Clp_N)	Clp repeat (R) N-terminal domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Chaperone protein ClpC1, chloroplastic	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA binding nucleic acid binding mRNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein folding chaperone ATP-dependent peptidase activity peptidase activity catalytic activity, acting on a protein	establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process intracellular protein localization regulation of biosynthetic process pigment metabolic process regulation of biological process porphyrin-containing compound biosynthetic process regulation of cellular process tetrapyrrole metabolic process chlorophyll metabolic process biological regulation pigment biosynthetic process tetrapyrrole biosynthetic process regulation of chlorophyll metabolic process biosynthetic process regulation of tetrapyrrole metabolic process metabolic process porphyrin-containing compound metabolic process regulation of tetrapyrrole biosynthetic process regulation of metabolic process chlorophyll biosynthetic process regulation of chlorophyll biosynthetic process protein targeting protein targeting to chloroplast cellular component organization organelle organization plastid organization chloroplast organization cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle plastid membrane protein-containing complex organelle inner membrane plastid membrane membrane protein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle plastid membrane protein-containing complex organelle inner membrane plastid membrane membrane protein complex chloroplast envelope Tic complex plastid inner membrane organelle envelope chloroplast membrane chloroplast inner membrane organelle membrane plastid envelope chloroplast plastid stroma chloroplast stroma external encapsulating structure plant-type cell wall extracellular region cell wall chloroplast thylakoid membrane organelle outer membrane plastid thylakoid membrane plastid thylakoid bounding membrane of organelle membraneless organelle thylakoid intracellular membraneless organelle thylakoid membrane chloroplast thylakoid outer membrane photosynthetic membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050130	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Family
A	IPR028299	ClpA/B, conserved site 2	Conserved Site
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR003959	ATPase, AAA-type, core	Domain
A	IPR019489	Clp ATPase, C-terminal	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR001270	ClpA/B family	Family
A	IPR018368	ClpA/B, conserved site 1	Conserved Site
A	IPR041546	ClpA/ClpB, AAA lid domain	Domain
A	IPR004176	Clp, repeat (R) N-terminal domain	Domain
A	IPR001943	UVR domain	Domain
A	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.