5GTG | pdb_00005gtg

Crystal structure of onion lachrymatory factor synthase (LFS) containing 1,2-propanediol

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Abhydrolase_3, BD-FAE	e5gtgH1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
G	Abhydrolase_3, BD-FAE	e5gtgG1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
F	Abhydrolase_3, BD-FAE	e5gtgF1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
E	Abhydrolase_3, BD-FAE	e5gtgE1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
D	Abhydrolase_3, BD-FAE	e5gtgD1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
C	Abhydrolase_3, BD-FAE	e5gtgC1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
B	Abhydrolase_3, BD-FAE	e5gtgB1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
A	Abhydrolase_3, BD-FAE	e5gtgA1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Lachrymatory-factor synthase	isomerase activity catalytic activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle vacuole cytoplasm intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019587	Polyketide cyclase/dehydrase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023393	START-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR053249	Lachrymatory-factor Synthase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.