5GQC | pdb_00005gqc

Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HAmdasee5gqcH1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: AmdaseECOD (v294.1)
GAmdasee5gqcG1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: AmdaseECOD (v294.1)
FAmdasee5gqcF1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: AmdaseECOD (v294.1)
EAmdasee5gqcE1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: AmdaseECOD (v294.1)
CAmdasee5gqcC1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: AmdaseECOD (v294.1)
BAmdasee5gqcB1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: AmdaseECOD (v294.1)
AAmdasee5gqcA1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: AmdaseECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Lacto-N-biosidase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR006626Parallel beta-helix repeatRepeat
A, B, C, D, E
IPR012334Pectin lyase foldHomologous Superfamily
A, B, C, D, E
IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
A, B, C, D, E
IPR044055Long Rib domainDomain
A, B, C, D, E
IPR011050Pectin lyase fold/virulence factorHomologous Superfamily