Structural analysis of fatty acid degradation regulator FadR from Bacillus halodurans
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E [auth D] | SCOP2B Superfamily | TetR C-terminal domain-like | 8090176 | 3000086 | SCOP2B (2022-06-29) |
| E [auth D] | SCOP2B Superfamily | Homeodomain-like | 8090175 | 3000001 | SCOP2B (2022-06-29) |
| D [auth C] | SCOP2B Superfamily | TetR C-terminal domain-like | 8090176 | 3000086 | SCOP2B (2022-06-29) |
| D [auth C] | SCOP2B Superfamily | Homeodomain-like | 8090175 | 3000001 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | TetR C-terminal domain-like | 8090176 | 3000086 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Homeodomain-like | 8090175 | 3000001 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Tetracyclin repressor-like | 8075997 | 4000333 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | TetR C-terminal domain-like | 8090176 | 3000086 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Homeodomain-like | 8090175 | 3000001 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth D] | Glyco_hydro_36 | e5gpcD1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Osmotin-like | T: Osmotin-like | F: Glyco_hydro_36 | ECOD (develop294) |
| D [auth C] | Glyco_hydro_36 | e5gpcC1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Osmotin-like | T: Osmotin-like | F: Glyco_hydro_36 | ECOD (develop294) |
| B | Glyco_hydro_36 | e5gpcB1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Osmotin-like | T: Osmotin-like | F: Glyco_hydro_36 | ECOD (develop294) |
| A | Glyco_hydro_36 | e5gpcA1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Osmotin-like | T: Osmotin-like | F: Glyco_hydro_36 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| E [auth D] | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
| E [auth D] | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
| D [auth C] | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
| D [auth C] | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
| B | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
| B | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
| A | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
| A | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, B, D [auth C], E [auth D] | PF00440 | Bacterial regulatory proteins, tetR family (TetR_N) | Bacterial regulatory proteins, tetR family | Domain | |
| A, B, D [auth C], E [auth D] | PF08359 | YsiA-like protein, C-terminal region (TetR_C_4) | YsiA-like protein, C-terminal region | The members of this family are thought to be TetR-type transcriptional regulators that bear particular similarity to YsiA (Swiss:P94548), a hypothetical protein expressed by B. subtilis. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| F [auth E] | DNA (5'-D(P*GP*AP*TP*GP*AP*AP*TP*GP*AP*AP*TP*AP*CP*TP*CP*AP*TP*TP*CP*AP*T)-3') | - | - | - |
| C [auth G] | DNA (5'-D(P*CP*AP*TP*GP*AP*AP*TP*GP*AP*GP*TP*AP*TP*TP*CP*AP*TP*TP*CP*AP*T)-3') | - | - | - |
| A, B, D [auth C], E [auth D] | Transcriptional regulator (TetR/AcrR family) | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, B, D [auth C], E [auth D] | IPR009057 | Homedomain-like superfamily | Homologous Superfamily |
| A, B, D [auth C], E [auth D] | IPR050624 | Nucleoid occlusion factor SlmA/HTH-type transcriptional regulator | Family |
| A, B, D [auth C], E [auth D] | IPR001647 | DNA-binding HTH domain, TetR-type | Domain |
| A, B, D [auth C], E [auth D] | IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | Homologous Superfamily |
| A, B, D [auth C], E [auth D] | IPR013570 | Transcription regulator YsiA, C-terminal | Domain |
