5GKH | pdb_00005gkh

Structure of EndoMS-dsDNA2 complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BNucS_Ne5gkhB1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: NucS_NECOD (v294.1)
ANucS_Ne5gkhA1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: NucS_NECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21003Endonuclease NucS N-terminal PH-like domain (NucS_N)Endonuclease NucS N-terminal PH-like domainEndonuclease NucS cleaves both 3' and 5' ssDNA extremities of branched DNA structures and it binds to ssDNA [1,2]. This entry represents the N-terminal PH-like domain of NucS. Domain
A, B
PF01939Endonuclease NucS C-terminal domain (NucS_C)Endonuclease NucS C-terminal domainEndonuclease NucS cleaves both 3' and 5' ssDNA extremities of branched DNA structures and it binds to ssDNA [1,2]. This entry represents the C-terminal domain of NucS. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA (5'-D(*AP*CP*GP*GP*CP*AP*CP*TP*TP*GP*GP*CP*AP*CP*G)-3')---
DNA (5'-D(*CP*GP*TP*GP*CP*CP*AP*GP*GP*TP*GP*CP*CP*GP*T)-3')---
A, B
Endonuclease EndoMS -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR048301Endonuclease NucS, C-terminal domainDomain
A, B
IPR048302Endonuclease NucS, N-terminal PH-like domainDomain
A, B
IPR011856tRNA endonuclease-like domain superfamilyHomologous Superfamily
A, B
IPR002793Endonuclease NucSFamily
A, B
IPR049173Endonuclease NucS, N-terminal domain superfamilyHomologous Superfamily