5G4G
Structure of the ATPgS-bound VAT complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cdc48 domain 2-like | 8034906 | 3000725 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ADC-like | 8042536 | 3001132 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cdc48 domain 2-like | 8034906 | 3000725 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ADC-like | 8042536 | 3001132 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ADC-like | 8042536 | 3001132 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Cdc48 domain 2-like | 8034906 | 3000725 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cdc48 domain 2-like | 8034906 | 3000725 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ADC-like | 8042536 | 3001132 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cdc48 domain 2-like | 8034906 | 3000725 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ADC-like | 8042536 | 3001132 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ADC-like | 8042536 | 3001132 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Cdc48 domain 2-like | 8034906 | 3000725 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02359 | e5g4gA4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
A | PF17862 | e5g4gA5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
A | PF02933 | e5g4gA3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
A | PF00004 | e5g4gA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
D | PF02359 | e5g4gD4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
D | PF17862 | e5g4gD5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
D | PF02933 | e5g4gD3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
D | PF00004 | e5g4gD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
F | PF02359 | e5g4gF4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
F | PF17862 | e5g4gF5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
F | PF02933 | e5g4gF3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
F | PF00004 | e5g4gF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
B | PF02359 | e5g4gB4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
B | PF17862 | e5g4gB5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
B | PF02933 | e5g4gB3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
B | PF00004 | e5g4gB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C | PF02359 | e5g4gC4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
C | PF17862 | e5g4gC5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
C | PF02933 | e5g4gC3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
C | PF00004 | e5g4gC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
E | PF02359 | e5g4gE4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
E | PF17862 | e5g4gE5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
E | PF02933 | e5g4gE3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
E | PF00004 | e5g4gE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
IPR004201 | CDC48, domain 2 | Domain | |
IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
IPR005938 | AAA ATPase, CDC48 family | Family | |
IPR003960 | ATPase, AAA-type, conserved site | Conserved Site | |
IPR003338 | CDC48, N-terminal subdomain | Domain | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |