5FUU | pdb_00005fuu

Ectodomain of cleaved wild type JR-FL EnvdCT trimer in complex with PGT151 Fab

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth L]	ubiquitin	e5fuuL1	A: alpha bundles	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (develop294)
J [auth N]	ubiquitin	e5fuuN1	A: alpha bundles	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (develop294)
G [auth H]	ubiquitin	e5fuuH1	A: alpha bundles	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (develop294)
I [auth M]	ubiquitin	e5fuuM1	A: alpha bundles	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (develop294)
F	ubiquitin	e5fuuF1	A: alpha bundles	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (develop294)
D	ubiquitin	e5fuuD1	A: alpha bundles	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (develop294)
B	ubiquitin	e5fuuB1	A: alpha bundles	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (develop294)
C	AWS	e5fuuC1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: AWS	ECOD (develop294)
E	AWS	e5fuuE1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: AWS	ECOD (develop294)
A	AWS	e5fuuA1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: AWS	ECOD (develop294)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
H [auth L], J [auth N]	Light Chain	IGKV2	Kappa	hiv-1 envelope glycoprotein gp160 \| hiv-1 envelope glycoprotein gp160, hiv-1 envelope glycoprotein gp160 \| hiv-1 envelope glycoprotein gp160 \| hiv-1 envelope glycoprotein gp160	SAbDab (2026-03-20)
G [auth H], I [auth M]	Heavy Chain	IGHV3	-	hiv-1 envelope glycoprotein gp160 \| hiv-1 envelope glycoprotein gp160, hiv-1 envelope glycoprotein gp160 \| hiv-1 envelope glycoprotein gp160 \| hiv-1 envelope glycoprotein gp160	SAbDab (2026-03-20)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth L], J [auth N]	IMMUNOGLOBULIN G PGT151	-	-	-
G [auth H], I [auth M]	IMMUNOGLOBULIN G PGT151	-	-	-
B, D, F	HIV-1 ENVELOPE GLYCOPROTEIN GP160	structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle host cell endosome membrane host cell cytoplasm host cell endosome host intracellular region
A, C, E	HIV-1 ENVELOPE GLYCOPROTEIN GP160	structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle host cell endosome membrane host cell cytoplasm host cell endosome host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F	IPR000777	Human immunodeficiency virus 1, envelope glycoprotein Gp120	Domain
B, D, F	IPR036377	Gp120 core superfamily	Homologous Superfamily
B, D, F	IPR000328	Retroviral envelope protein GP41-like	Domain
B, D, F	IPR037527	Envelope glycoprotein Gp160	Family
A, C, E	IPR000777	Human immunodeficiency virus 1, envelope glycoprotein Gp120	Domain
A, C, E	IPR036377	Gp120 core superfamily	Homologous Superfamily
A, C, E	IPR000328	Retroviral envelope protein GP41-like	Domain
A, C, E	IPR037527	Envelope glycoprotein Gp160	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.