5FMU | pdb_00005fmu

MmIFT54 CH-domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	IFT-B2 family-like	8051728	4007487	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Calponin-homology domain, CH-domain	8051940	3000264	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Calponin-homology domain, CH-domain	8051940	3000264	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Calponin-homology domain, CH-domain	8051940	3000264	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Calponin-homology domain, CH-domain	8051940	3000264	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MIP-T3	e5fmuA1	A: alpha bundles	X: CH domain-like	H: Calponin-homology domain-like (From Topology)	T: Calponin-homology domain-like	F: MIP-T3	ECOD (1.6)
B	MIP-T3	e5fmuB1	A: alpha bundles	X: CH domain-like	H: Calponin-homology domain-like (From Topology)	T: Calponin-homology domain-like	F: MIP-T3	ECOD (1.6)
C	MIP-T3	e5fmuC1	A: alpha bundles	X: CH domain-like	H: Calponin-homology domain-like (From Topology)	T: Calponin-homology domain-like	F: MIP-T3	ECOD (1.6)
D	MIP-T3	e5fmuD1	A: alpha bundles	X: CH domain-like	H: Calponin-homology domain-like (From Topology)	T: Calponin-homology domain-like	F: MIP-T3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.418.50	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
B	1.10.418.50	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
C	1.10.418.50	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)
D	1.10.418.50	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF10243	Microtubule-binding protein MIP-T3 CH-like domain (MIP-T3)	Microtubule-binding protein MIP-T3 CH-like domain	This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 ...	This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	TRAF3-INTERACTING PROTEIN 1	protein binding binding signaling receptor binding cytoskeletal protein binding tubulin binding microtubule binding	developmental process multicellular organismal process epithelium development neural tube development tube development chordate embryonic development pattern specification process nervous system development embryo development tissue development regionalization multicellular organism development embryo development ending in birth or egg hatching neural tube patterning anatomical structure development developmental process multicellular organismal process epithelium development neural tube development tube development chordate embryonic development pattern specification process nervous system development embryo development tissue development regionalization multicellular organism development embryo development ending in birth or egg hatching neural tube patterning anatomical structure development system development regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms negative regulation of response to biotic stimulus response to stimulus regulation of response to external stimulus negative regulation of biological process response to biotic stimulus regulation of defense response to virus response to stress regulation of response to stress response to external biotic stimulus response to virus regulation of biological process negative regulation of response to stimulus defense response response to other organism biological regulation response to external stimulus defense response to virus regulation of response to stimulus negative regulation of response to external stimulus negative regulation of defense response negative regulation of defense response to virus heart development animal organ development embryonic heart tube development circulatory system development embryonic organ development regulation of cellular process regulation of cellular component organization negative regulation of cellular component organization protein-containing complex organization regulation of cellular component biogenesis negative regulation of protein-containing complex assembly cellular component organization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly negative regulation of cellular process cellular process cellular component organization or biogenesis negative regulation of type I interferon production cytokine production regulation of cytokine production regulation of multicellular organismal process regulation of interferon-beta production interferon-beta production negative regulation of macromolecule metabolic process regulation of biosynthetic process type I interferon production negative regulation of metabolic process negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of interferon-beta production metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of multicellular organismal process regulation of metabolic process regulation of type I interferon production cellular response to stimulus negative regulation of signaling signaling regulation of signal transduction negative regulation of cell communication cell communication negative regulation of smoothened signaling pathway signal transduction regulation of smoothened signaling pathway regulation of signaling cell surface receptor signaling pathway negative regulation of signal transduction smoothened signaling pathway regulation of cell communication organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly organelle organization cilium assembly cilium organization cell projection assembly anatomical structure morphogenesis post-anal tail morphogenesis regulation of cytoskeleton organization microtubule cytoskeleton organization regulation of microtubule-based process regulation of organelle organization microtubule-based process regulation of microtubule cytoskeleton organization cytoskeleton organization tissue morphogenesis morphogenesis of a polarized epithelium morphogenesis of an epithelium cellular localization transport intracellular transport establishment of localization localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement intraciliary transport intraciliary anterograde transport sensory organ development eye development visual system development embryonic camera-type eye development camera-type eye development sensory system development RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription negative regulation of RNA metabolic process kidney development renal system development limb development appendage development embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis appendage morphogenesis embryonic digit morphogenesis limb morphogenesis	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm intracellular membraneless organelle cytoplasmic region plasma membrane bounded cell projection cytoplasm intracellular organelle cytoskeleton membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm intracellular membraneless organelle cytoplasmic region plasma membrane bounded cell projection cytoplasm intracellular organelle cytoskeleton membraneless organelle cytoplasm ciliary transition zone centrosome microtubule organizing center microtubule cytoskeleton cytosol ciliary tip nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen fibrillar center nuclear lumen ciliary base nuclear body nucleoplasm ciliary basal body intraciliary transport particle B protein-containing complex intraciliary transport particle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018799	TRAF3-interacting protein 1	Family
A, B, C, D	IPR042576	TRAF3-interacting protein 1, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR040468	TRAF3-interacting protein 1, N-terminal	Domain
A, B, C, D	IPR041476	TRAF3-interacting protein 1, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.