5FKQ | pdb_00005fkq

Unraveling the first step of xyloglucan degradation by the soil saprophyte Cellvibrio japonicus through the functional and structural characterization of a potent GH74 endo-xyloglucanase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5fkqb1	All beta proteins	7-bladed beta-propeller	Oligoxyloglucan reducing end-specific cellobiohydrolase	automated matches	automated matches	(Cellvibrio japonicus Ueda107 ) [TaxId: 498211 ],	SCOPe (2.08)
A	d5fkqa1	All beta proteins	7-bladed beta-propeller	Oligoxyloglucan reducing end-specific cellobiohydrolase	automated matches	automated matches	(Cellvibrio japonicus Ueda107 ) [TaxId: 498211 ],	SCOPe (2.08)
A	d5fkqa3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Cellvibrio japonicus Ueda107 ) [TaxId: 498211 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e5fkqB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Rubredoxin-related	T: Rubredoxin-related	F:	ECOD (v294.1)
A		e5fkqA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Rubredoxin-related	T: Rubredoxin-related	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ENDO-1,4-BETA-GLUCANASE/XYLOGLUCANASE, PUTATIVE, GLY74A	binding polysaccharide binding cellulose binding carbohydrate binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process glucan metabolic process polysaccharide metabolic process xyloglucan metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process macromolecule catabolic process beta-glucan catabolic process carbohydrate metabolic process glucan metabolic process polysaccharide metabolic process xyloglucan metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process macromolecule catabolic process beta-glucan catabolic process polysaccharide catabolic process cellulose catabolic process cellulose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036601	CBM10 superfamily	Homologous Superfamily
A, B	IPR012291	CBM2, carbohydrate-binding domain superfamily	Homologous Superfamily
A, B	IPR052025	Xyloglucan-specific glycosyl hydrolase	Family
A, B	IPR018366	Carbohydrate-binding type-2, conserved site	Conserved Site
A, B	IPR002883	CBM10/dockerin domain	Domain
A, B	IPR009031	Carbohydrate binding module family 10	Domain
A, B	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
A, B	IPR001919	Carbohydrate-binding type-2 domain	Domain
A, B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.