5FJX | pdb_00005fjx

Yeast delta-COP-I mu-homology domain complexed with Gcs1 WxxF peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Adap_comp_sub_1st_1	e5fjxA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_1st_1	ECOD (1.6)
A	Adap_comp_sub_2nd_1	e5fjxA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_2nd_1	ECOD (1.6)
B	Adap_comp_sub_1st_1	e5fjxB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_1st_1	ECOD (1.6)
B	Adap_comp_sub_2nd_1	e5fjxB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_2nd_1	ECOD (1.6)
C	Adap_comp_sub_1st_1	e5fjxC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_1st_1	ECOD (1.6)
C	Adap_comp_sub_2nd_1	e5fjxC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_2nd_1	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	COATOMER SUBUNIT DELTA	-	localization transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport cellular component organization organelle organization Golgi inheritance organelle inheritance cellular component organization or biogenesis Golgi organization endomembrane system organization localization transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport cellular component organization organelle organization Golgi inheritance organelle inheritance cellular component organization or biogenesis Golgi organization endomembrane system organization Golgi localization organelle localization Golgi distribution to daughter cells establishment of protein localization nitrogen compound transport protein transport macromolecule localization intracellular protein localization cellular localization establishment of localization in cell intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat Golgi apparatus membrane coated membrane intracellular membrane-bounded organelle COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane cytoplasm organelle membrane Golgi membrane
D, E	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN GCS1	cytoskeletal protein binding actin binding protein binding binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cation binding transition metal ion binding zinc ion binding cytoskeletal protein binding actin binding protein binding binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular process cell cycle mitotic cell cycle Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport cellular process cell cycle mitotic cell cycle Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization protein transport macromolecule localization intracellular protein localization Golgi vesicle transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization establishment of organelle localization vesicle budding from membrane Golgi vesicle budding vesicle targeting, to, from or within Golgi vesicle targeting COPI-coated vesicle budding vesicle organization organelle localization establishment of localization in cell vesicle coating membrane organization vesicle localization establishment of vesicle localization COPI coating of Golgi vesicle Golgi transport vesicle coating intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system trans-Golgi network cytoskeleton membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system trans-Golgi network cytoskeleton membraneless organelle intracellular membraneless organelle endosome intracellular vesicle cytoplasmic vesicle vesicle Golgi membrane membrane bounding membrane of organelle organelle membrane cytosol perinuclear region of cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR011012	Longin-like domain superfamily	Homologous Superfamily
A, B, C	IPR027059	Coatomer delta subunit	Family
A, B, C	IPR022775	AP complex, mu/sigma subunit	Domain
A, B, C	IPR036168	AP-2 complex subunit mu, C-terminal superfamily	Homologous Superfamily
A, B, C	IPR028565	Mu homology domain	Domain
D, E	IPR037278	ARFGAP/RecO-like zinc finger	Homologous Superfamily
D, E	IPR001164	Arf GTPase activating protein	Domain
D, E	IPR038508	ArfGAP domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.