5FD9 | pdb_00005fd9

X-ray Crystal Structure of ESCRT-III Snf7 core domain (conformation B)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	SNF7/CHMP3-like	8051379	4007341	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	IST1/CHMP3-like	8055752	3002301	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5fd9A1	A: Caspase-like	X: alpha/beta-Hydrolases	H: alpha/beta-Hydrolases	T: Thioesterase	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03357	Snf7 (Snf7)	Snf7	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Vacuolar-sorting protein SNF7	identical protein binding protein binding binding	membrane organization vesicle budding from membrane transport establishment of localization vesicle-mediated transport cellular component organization vesicle organization localization organelle organization cellular process cellular component organization or biogenesis cellular localization late endosome to vacuole transport establishment of localization in cell membrane organization vesicle budding from membrane transport establishment of localization vesicle-mediated transport cellular component organization vesicle organization localization organelle organization cellular process cellular component organization or biogenesis cellular localization late endosome to vacuole transport establishment of localization in cell vacuolar transport intracellular transport endosomal transport late endosome to vacuole transport via multivesicular body sorting pathway multivesicular body sorting pathway endosome transport via multivesicular body sorting pathway establishment of protein localization protein transport macromolecule localization intracellular protein localization peroxisome organization catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process intralumenal vesicle formation endosome organization endomembrane system organization ATP transport nitrogen compound transport organic anion transport nucleotide transport purine ribonucleotide transport carbohydrate derivative transport purine nucleotide transport adenine nucleotide transport ATP export nucleobase-containing compound transport organophosphate ester transport macroautophagy reticulophagy autophagy process utilizing autophagic mechanism	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm cytosol endosome membrane protein-containing complex membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm cytosol endosome membrane protein-containing complex ESCRT complex endosome membrane intracellular vesicle membrane protein complex cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane ESCRT III complex vesicle organelle membrane cell periphery plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane late endosome multivesicular body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005024	Snf7 family	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	MONOTOPIC MEMBRANE PROTEINS	Membrane-Shaping Proteins (monotopic)	ESCRT-III Snf7 core domain, conformation A

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.