5FC2 | pdb_00005fc2

Structure of a separase in complex with a pAMK peptide containing a phospho-serine


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilySeparase-like 8051696 4007478 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyCaspase-like 8104077 3001096 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPeptidase_C50_Ce5fc2B2 A: a/b three-layered sandwichesX: Caspase-like (From Topology)H: Caspase-like (From Topology)T: Caspase-likeF: Peptidase_C50_CECOD (1.6)
BPeptidase_C50_Ne5fc2B1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Separase pseudo-protease domain (PPD) (From Topology)T: Separase pseudo-protease domain (PPD)F: Peptidase_C50_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03568Separin, protease domain (Separin_C)Separin, protease domainThis entry represents the C-terminal caspase-like protease domain found in Separin. Separin is a cysteine protease critical for chromosome segregation during mitosis and meiosis, exhibits a conserved multi-domain architecture across eukaryotes. Separ ...This entry represents the C-terminal caspase-like protease domain found in Separin. Separin is a cysteine protease critical for chromosome segregation during mitosis and meiosis, exhibits a conserved multi-domain architecture across eukaryotes. Separin contains an N-terminal HEAT/ARM repeats which allows the protein to bind regulatory partners like securin and cyclin B1; followed by a TPR-like domain which binds phosphorylated residues and a C-terminal caspase-like protease domain which contains a catalytic triad (Cys-His-Asp) and recognises substrates with a conserved arginine at the P1 position [1,3]. The C-terminal domain is structurally related to caspases but includes a unique substrate-binding subdomain (PPD) [2,4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
separase
pAMK, peptide containing a phospho-serine---

InterPro: Protein Family Classification InterPro Database Homepage

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
6L3
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046