5F3Y | pdb_00005f3y

Crystal Structure of Myo7b N-MyTH4-FERM-SH3 in complex with Anks4b CEN

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MyTH4 domain-like	8048246	4006026	SCOP2 (2022-06-29)
A	SCOP2 Family	FERM domain-like	8091843	4000747	SCOP2 (2022-06-29)
A	SCOP2 Family	SH3-domain	8091847	4000369	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MyTH4 domain-like	8091842	3002546	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FERM central domain-like	8091845	3001227	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SH3-domain	8091848	3000153	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ubiquitin-like	8091844	3000157	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8091846	3000134	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FERM_C1_MyoVII	e5f3yA4	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: FERM_C1_MyoVII	ECOD (1.6)
A	SH3_1	e5f3yA5	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
A	FERM_M	e5f3yA3	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
A	MyTH4	e5f3yA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: MyTH4	ECOD (1.6)
A	RA_2	e5f3yA2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: RA_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21989	RA like domain (RA_2)	RA like domain		Domain
A	PF00784	MyTH4 domain (MyTH4)	MyTH4 domain	-	Family
A	PF21998	Myosin-X FERM PH domain-like (FERM_C1_MyoVII)	Myosin-X FERM PH domain-like	This is the C-terminal PH domain of myosin-X FERM domain [1]. FERM domain has a stable arrangement of 3 domains: N-terminal domains - ubiquitin-like, Middle domain - Acyl-CoA binding protein-like and C-terminal domain - PH domain-like.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Ankyrin repeat and SAM domain-containing protein 4B	-	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process cellular developmental process cell differentiation localization macromolecule localization protein localization to microvillus intracellular protein localization cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process cellular developmental process cell differentiation localization macromolecule localization protein localization to microvillus intracellular protein localization brush border assembly cellular response to stimulus cellular response to stress response to stimulus response to stress response to endoplasmic reticulum stress	cell projection cellular anatomical structure actin-based cell projection microvillus plasma membrane bounded cell projection cell periphery plasma membrane membrane apical part of cell cluster of actin-based cell projections brush border membrane-bounded organelle intracellular anatomical structure organelle subcompartment cell projection cellular anatomical structure actin-based cell projection microvillus plasma membrane bounded cell projection cell periphery plasma membrane membrane apical part of cell cluster of actin-based cell projections brush border membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane
A	Unconventional myosin-VIIb	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity microfilament motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	developmental process cellular developmental process cell differentiation cellular process localization import into cell transport endocytosis establishment of localization vesicle-mediated transport cellular component biogenesis cellular component organization cellular component assembly brush border assembly developmental process cellular developmental process cell differentiation cellular process localization import into cell transport endocytosis establishment of localization vesicle-mediated transport cellular component biogenesis cellular component organization cellular component assembly brush border assembly cellular component organization or biogenesis sensory organ development animal organ development anatomical structure development multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus organelle organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization actin filament-based movement	cellular anatomical structure membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton apical part of cell cluster of actin-based cell projections brush border cytoplasm protein-containing complex cellular anatomical structure membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton apical part of cell cluster of actin-based cell projections brush border cytoplasm protein-containing complex myosin complex cell projection actin-based cell projection microvillus plasma membrane bounded cell projection apical cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR002110	Ankyrin repeat	Repeat
B	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
B	IPR037601	ANKS4B, SAM domain	Domain
B	IPR001660	Sterile alpha motif domain	Domain
A	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A	IPR041794	Myosin VII, FERM domain C-lobe, repeat 2	Domain
A	IPR000299	FERM domain	Domain
A	IPR001609	Myosin head, motor domain-like	Domain
A	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A	IPR019748	FERM central domain	Domain
A	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A	IPR051567	Unconventional Myosin ATPase	Family
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR000048	IQ motif, EF-hand binding site	Binding Site
A	IPR038185	MyTH4 domain superfamily	Homologous Superfamily
A	IPR057130	Myosin VII, N-terminal domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR019749	Band 4.1 domain	Domain
A	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A	IPR000857	MyTH4 domain	Domain
A	IPR057096	KRIT1/FRMD8, FERM domain C-lobe	Domain
A	IPR001452	SH3 domain	Domain
A	IPR041793	Myosin VII, FERM domain C-lobe, repeat 1	Domain
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A	IPR036106	Class VII myosin, motor domain	Domain