5F0L | pdb_00005f0l

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyPX domain 8084569 3001006 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyArrestin/Vps26-like 8051908 3002071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyArrestin/Vps26-like 8051909 3002071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CAA9e5f0lC1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p)T: Ribosomal protein L29 (L29p)F: AA9ECOD (develop294)
BAA9e5f0lB1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p)T: Ribosomal protein L29 (L29p)F: AA9ECOD (develop294)
APhage_int_SAM_6e5f0lA1 A: alpha bundlesX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: Phage_int_SAM_6ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domainCATH (4.3.0)
B2.60.40.640 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00787PX domain (PX)PX domainPX domains bind to phosphoinositides. Domain
PF03643Vacuolar protein sorting-associated protein 26 (Vps26)Vacuolar protein sorting-associated protein 26- Family
PF03635Vacuolar protein sorting-associated protein 35 (Vps35)Vacuolar protein sorting-associated protein 35- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Natural resistance-associated macrophage protein 2
Sorting nexin-3
Vacuolar protein sorting-associated protein 26A-
Vacuolar protein sorting-associated protein 35