Annotations: 5EYB

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Myb_DNA-binding_1	e5eybA3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Myb_DNA-binding_1	ECOD (1.6)
A	KOG0051	e5eybA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: KOG0051	ECOD (1.6)
A	UNK_F_TYPE	e5eybA5	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: UNK_F_TYPE	ECOD (1.6)
D [auth B]	Myb_DNA-binding_1	e5eybB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Myb_DNA-binding_1	ECOD (1.6)
D [auth B]	KOG0051	e5eybB5	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: KOG0051	ECOD (1.6)
D [auth B]	UNK_F_TYPE	e5eybB2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth B]	PF00249	Myb-like DNA-binding domain (Myb_DNA-binding)	Myb-like DNA-binding domain	This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].	Domain
A, D [auth B]	PF21559	DNA-binding protein reb1, Myb-associated domain (Reb1_MybAD)	DNA-binding protein reb1, Myb-associated domain	This domain is found in DNA-binding protein reb1 from Schizosaccharomyces pombe and similar proteins from yeast. Reb1 mediate transcription termination and is also involved in replication termination and transcription activation. This protein, almost ...	This domain is found in DNA-binding protein reb1 from Schizosaccharomyces pombe and similar proteins from yeast. Reb1 mediate transcription termination and is also involved in replication termination and transcription activation. This protein, almost entirely alpha-helical, is organised into five domains: two Myb-associated domains (MybADs, this entry), each consisting of four alpha-helices, two Myb repeats (MybRs, Pfam:PF00249) and a final C-terminal domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth B]	DNA-binding protein reb1	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding DNA binding, bending rDNA spacer replication fork barrier binding, bending sequence-specific DNA binding, bending rDNA binding replication fork barrier binding rDNA spacer replication fork barrier binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding DNA binding, bending rDNA spacer replication fork barrier binding, bending sequence-specific DNA binding, bending rDNA binding replication fork barrier binding rDNA spacer replication fork barrier binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription termination site sequence-specific DNA binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	DNA-templated DNA replication primary metabolic process DNA metabolic process DNA replication termination cis-acting DNA replication termination nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process macromolecule metabolic process site-specific DNA replication termination RNA metabolic process nucleobase-containing compound biosynthetic process DNA-templated DNA replication primary metabolic process DNA metabolic process DNA replication termination cis-acting DNA replication termination nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process macromolecule metabolic process site-specific DNA replication termination RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process transcription by RNA polymerase I termination of RNA polymerase I transcription regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process DNA-templated DNA replication maintenance of fidelity negative regulation of biological process negative regulation of DNA-templated DNA replication negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA replication negative regulation of metabolic process regulation of DNA-templated DNA replication replication fork arrest negative regulation of DNA metabolic process regulation of DNA metabolic process regulation of DNA replication replication fork arrest involved in DNA replication termination positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process maintenance of DNA repeat elements cellular component organization cellular component organization or biogenesis replication fork arrest at rDNA repeats chromosome organization maintenance of rDNA organelle organization	intracellular organelle rDNA heterochromatin cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin membrane-bounded organelle inclusion body nucleus intracellular membrane-bounded organelle intracellular organelle rDNA heterochromatin cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin membrane-bounded organelle inclusion body nucleus intracellular membrane-bounded organelle nucleolar peripheral inclusion body nuclear inclusion body
B [auth C], E	DNA (26-MER)	-	-	-
C [auth D], F	DNA (26-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth B]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, D [auth B]	IPR017930	Myb domain	Domain
A, D [auth B]	IPR001005	SANT/Myb domain	Domain
A, D [auth B]	IPR049260	DNA-binding protein REB1, Myb-associated domain	Domain
A, D [auth B]	IPR051651	DMTF1 DNA-binding transcriptional regulators	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.