5EXB | pdb_00005exb

Wild type green fluorescent protein DendFP (Dendronephthya sp.)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d5exbp_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
O	d5exbo_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
N	d5exbn_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
M	d5exbm_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
L	d5exbl1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
L	d5exbl2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
K	d5exbk1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
K	d5exbk2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
J	d5exbj_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
I	d5exbi_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
H	d5exbh_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
G	d5exbg1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
G	d5exbg2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
F	d5exbf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
E	d5exbe_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
D	d5exbd1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
D	d5exbd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
C	d5exbc1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
C	d5exbc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
B	d5exbb1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
B	d5exbb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)
A	d5exba_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Dendronephthya sp. ) [TaxId: 51110 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	e5exbP1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
O	e5exbO1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
N	e5exbN1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
M	e5exbM1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
L	e5exbL1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
K	e5exbK1	A: HTH	X: HTH	H: winged helix domain	T: Glyco_hydro_18	F:	ECOD (20:10:01)
J	e5exbJ1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
I	e5exbI1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
H	e5exbH1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
G	e5exbG1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
F	e5exbF1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
E	e5exbE1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
D	e5exbD1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
C	e5exbC1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
B	e5exbB1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)
A	e5exbA1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
O	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
N	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
M	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
L	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
K	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
J	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
I	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Green fluorescent protein	cation binding ion binding binding metal ion binding small molecule binding	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR000786	Green fluorescent protein, GFP	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR009017	Green fluorescent protein	Homologous Superfamily