5E7F

Complex between lactococcal phage Tuc2009 RBP head domain and a nanobody (L06)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
SAbDab Antibody Annotation
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5e7fa1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	dromedary (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
A	d5e7fa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	dromedary (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
B	d5e7fb1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	dromedary (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
B	d5e7fb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	dromedary (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
C	d5e7fc1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	dromedary (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
C	d5e7fc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	dromedary (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	V-set_8	e5e7fA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
B	V-set_8	e5e7fB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
C	V-set_8	e5e7fC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
D [auth G]	EUF07677	e5e7fG1	A: beta sandwiches	X: jelly-roll	H: Major structural protein 1 jelly-roll domain (From Topology)	T: Major structural protein 1 jelly-roll domain	F: EUF07677	ECOD (1.6)
E [auth H]	EUF07677	e5e7fH1	A: beta sandwiches	X: jelly-roll	H: Major structural protein 1 jelly-roll domain (From Topology)	T: Major structural protein 1 jelly-roll domain	F: EUF07677	ECOD (1.6)
F [auth I]	EUF07677	e5e7fI1	A: beta sandwiches	X: jelly-roll	H: Major structural protein 1 jelly-roll domain (From Topology)	T: Major structural protein 1 jelly-roll domain	F: EUF07677	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A, B, C	Heavy Chain	IGHV1	-	major structural protein 1	SAbDab (2024-09-13)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth G], E [auth H], F [auth I]	PF21454	Major structural protein 1, jelly-roll domain (MSP1_barrel)	Major structural protein 1, jelly-roll domain	This entry represents a beta barrel domain found towards the N-terminal of phage Tuc2009 receptor binding protein (RBP) which forms the head domain, involved in carbohydrate recognition [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth G], E [auth H], F [auth I]	IPR040956	Lower baseplate protein, N-terminal	Domain
D [auth G], E [auth H], F [auth I]	IPR049005	Major structural protein 1, jelly-roll domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.