5E0S | pdb_00005e0s

crystal structure of the active form of the proteolytic complex clpP1 and clpP2

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Nd5e0sn_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Md5e0sm_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Ld5e0sl_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Kd5e0sk_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Jd5e0sj_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Id5e0si_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Hd5e0sh_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Gd5e0sg_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Fd5e0sf_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Ed5e0se_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Dd5e0sd_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Cd5e0sc_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Bd5e0sb_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Ad5e0sa_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth l]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
X [auth j]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
W [auth i]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
V [auth h]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
BA [auth n]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
AA [auth m]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
U [auth g]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
T [auth f]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
S [auth e]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
R [auth d]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
Q [auth c]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
P [auth b]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
O [auth a]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth l]CLP_proteasee5e0sl1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
Y [auth k]CLP_proteasee5e0sk1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
X [auth j]CLP_proteasee5e0sj1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
W [auth i]CLP_proteasee5e0si1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
V [auth h]CLP_proteasee5e0sh1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
NCLP_proteasee5e0sN1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
MCLP_proteasee5e0sM1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
LCLP_proteasee5e0sL1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
KCLP_proteasee5e0sK1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
JCLP_proteasee5e0sJ1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
ICLP_proteasee5e0sI1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
HCLP_proteasee5e0sH1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
BA [auth n]CLP_proteasee5e0sn1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
AA [auth m]CLP_proteasee5e0sm1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
U [auth g]CLP_proteasee5e0sg1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
T [auth f]CLP_proteasee5e0sf1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
S [auth e]CLP_proteasee5e0se1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
R [auth d]CLP_proteasee5e0sd1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
Q [auth c]CLP_proteasee5e0sc1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
P [auth b]CLP_proteasee5e0sb1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
O [auth a]CLP_proteasee5e0sa1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
GCLP_proteasee5e0sG1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
FCLP_proteasee5e0sF1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
ECLP_proteasee5e0sE1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
DCLP_proteasee5e0sD1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
CCLP_proteasee5e0sC1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
BCLP_proteasee5e0sB1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)
ACLP_proteasee5e0sA1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: CLP_proteaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
Z [auth l]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
Y [auth k]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
X [auth j]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
W [auth i]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
V [auth h]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
N3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
M3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
L3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
K3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
J3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
I3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
H3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
BA [auth n]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
AA [auth m]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
U [auth g]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
T [auth f]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
S [auth e]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
R [auth d]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
Q [auth c]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
P [auth b]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
O [auth a]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
G3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
F3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
E3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
D3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
C3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
B3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
A3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00574Clp protease (CLP_protease)Clp proteaseThe Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.
Domain
A,
B,
C,
D,
E,
PF00574Clp protease (CLP_protease)Clp proteaseThe Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent Clp protease proteolytic subunit 1
A,
B,
C,
D,
E,
ATP-dependent Clp protease proteolytic subunit 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
IPR001907ATP-dependent Clp protease proteolytic subunitFamily
IPR033135ClpP, histidine active siteActive Site
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAFamily
A,
B,
C,
D,
E,
IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
A,
B,
C,
D,
E,
IPR001907ATP-dependent Clp protease proteolytic subunitFamily
A,
B,
C,
D,
E,
IPR018215ClpP, Ser active siteActive Site
A,
B,
C,
D,
E,
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAFamily
A,
B,
C,
D,
E,
IPR033135ClpP, histidine active siteActive Site