5DZY | pdb_00005dzy

Protocadherin beta 8 extracellular cadherin domains 1-4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Cadherin-like	8091875	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091874	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091876	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091873	3002049	SCOP2B (2022-06-29)
C	SCOP2 Family	Cadherin	8050634	4007535	SCOP2 (2022-06-29)
C	SCOP2 Family	Cadherin	8091870	4007535	SCOP2 (2022-06-29)
C	SCOP2 Family	Cadherin	8091871	4007535	SCOP2 (2022-06-29)
C	SCOP2 Family	Cadherin	8091872	4007535	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Cadherin-like	8091873	3002049	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Cadherin-like	8091874	3002049	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Cadherin-like	8091875	3002049	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Cadherin-like	8091876	3002049	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091874	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091875	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091873	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091876	3002049	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cadherin-like	8091874	3002049	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cadherin-like	8091876	3002049	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cadherin-like	8091873	3002049	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cadherin-like	8091875	3002049	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cadherin-like	8091876	3002049	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cadherin-like	8091874	3002049	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cadherin-like	8091875	3002049	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cadherin-like	8091873	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091874	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091873	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091876	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091875	3002049	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Cadherin_2	e5dzyB3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
B	Cadherin	e5dzyB4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
C	Cadherin_2	e5dzyC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
C	Cadherin	e5dzyC3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
D	Cadherin_2	e5dzyD4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
D	Cadherin	e5dzyD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
E	Cadherin_2	e5dzyE4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
E	Cadherin	e5dzyE2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
F	Cadherin_2	e5dzyF3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
F	Cadherin	e5dzyF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
A	Cadherin_2	e5dzyA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
A	Cadherin	e5dzyA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)
C	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)
D	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)
E	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)
F	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain
A, B, C, D, E A, B, C, D, E, F	PF08266	Cadherin-like (Cadherin_2)	Cadherin-like	This cadherin domain is usually the most N-terminal copy of the domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Pcdhb8 protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding identical protein binding protein binding	cell adhesion cell-cell adhesion homophilic cell-cell adhesion cellular process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR020894	Cadherin conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR032455	Cadherin, cytoplasmic C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A, B, C, D, E A, B, C, D, E, F	IPR013164	Cadherin, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR002126	Cadherin-like	Domain