5DZW | pdb_00005dzw

Protocadherin alpha 4 extracellular cadherin domains 1-4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cadherin	8050643	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091929	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091930	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091931	4007535	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091932	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091933	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091934	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091935	3002049	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cadherin_2	e5dzwA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
A	Cadherin	e5dzwA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08266	Cadherin-like (Cadherin_2)	Cadherin-like	This cadherin domain is usually the most N-terminal copy of the domain.	Domain
A	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protocadherin alpha-4	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding identical protein binding protein binding	cell adhesion cell-cell adhesion homophilic cell-cell adhesion cellular process	cellular anatomical structure membrane synapse cell junction cell periphery plasma membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR031904	Cadherin, C-terminal catenin-binding domain	Domain
A	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A	IPR013164	Cadherin, N-terminal	Domain
A	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A	IPR020894	Cadherin conserved site	Conserved Site
A	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.