5DZK | pdb_00005dzk

Crystal structure of the active form of the proteolytic complex clpP1 and clpP2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
YA [auth l]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
Y [auth M]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
WA [auth k]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
W [auth L]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
UA [auth j]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
U [auth K]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
SA [auth i]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
S [auth J]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
QA [auth h]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
Q [auth I]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
CB [auth n]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
AB [auth m]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
AA [auth N]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
OA [auth g]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
MA [auth f]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
M [auth G]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
KA [auth e]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
K [auth F]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
IA [auth d]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
GA [auth c]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
EA [auth b]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
CA [auth a]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
YA [auth l]	CLP_protease	e5dzkl1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
Y [auth M]	CLP_protease	e5dzkM1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
WA [auth k]	CLP_protease	e5dzkk1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
W [auth L]	CLP_protease	e5dzkL1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
UA [auth j]	CLP_protease	e5dzkj1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
U [auth K]	CLP_protease	e5dzkK1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
SA [auth i]	CLP_protease	e5dzki1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
S [auth J]	CLP_protease	e5dzkJ1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
QA [auth h]	CLP_protease	e5dzkh1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
Q [auth I]	CLP_protease	e5dzkI1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
O [auth H]	CLP_protease	e5dzkH1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
CB [auth n]	CLP_protease	e5dzkn1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
AB [auth m]	CLP_protease	e5dzkm1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
AA [auth N]	CLP_protease	e5dzkN1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
OA [auth g]	CLP_protease	e5dzkg1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
MA [auth f]	CLP_protease	e5dzkf1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
M [auth G]	CLP_protease	e5dzkG1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
KA [auth e]	CLP_protease	e5dzke1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
K [auth F]	CLP_protease	e5dzkF1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
IA [auth d]	CLP_protease	e5dzkd1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
I [auth E]	CLP_protease	e5dzkE1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
GA [auth c]	CLP_protease	e5dzkc1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
G [auth D]	CLP_protease	e5dzkD1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
EA [auth b]	CLP_protease	e5dzkb1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
E [auth C]	CLP_protease	e5dzkC1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
CA [auth a]	CLP_protease	e5dzka1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
C [auth B]	CLP_protease	e5dzkB1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)
A	CLP_protease	e5dzkA1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: CLP_protease	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
YA [auth l]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
Y [auth M]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
WA [auth k]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
W [auth L]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
UA [auth j]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
U [auth K]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
SA [auth i]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
S [auth J]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
QA [auth h]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
Q [auth I]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
O [auth H]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
CB [auth n]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
AB [auth m]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
AA [auth N]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
OA [auth g]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
MA [auth f]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
M [auth G]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
KA [auth e]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
K [auth F]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
IA [auth d]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
I [auth E]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
GA [auth c]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
G [auth D]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
EA [auth b]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
E [auth C]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
CA [auth a]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
C [auth B]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
A	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], CA [auth a], E [auth C], EA [auth b], A, C [auth B], CA [auth a], E [auth C], EA [auth b], G [auth D], GA [auth c], I [auth E], IA [auth d], K [auth F], KA [auth e], M [auth G], MA [auth f], OA [auth g]	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], QA [auth h], S [auth J], SA [auth i], U [auth K], UA [auth j], W [auth L], WA [auth k], Y [auth M], YA [auth l]	ATP-dependent Clp protease proteolytic subunit 1	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process proteolysis metabolic process cellular process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane endopeptidase Clp complex protein-containing complex catalytic complex
B [auth O], BA [auth 2], BB [auth 3], D [auth P], DA [auth o], B [auth O], BA [auth 2], BB [auth 3], D [auth P], DA [auth o], DB [auth 4], F [auth Q], FA [auth p], H [auth R], HA [auth q], J [auth S], JA [auth r], L [auth T], LA [auth s], N [auth U], NA [auth t], P [auth V], PA [auth u], R [auth W], RA [auth v], T [auth X], TA [auth w], V [auth Y], VA [auth x], X [auth Z], XA [auth y], Z [auth 1], ZA [auth z]	BEZ-LEU-LEU	-	-	-
A, C [auth B], CA [auth a], E [auth C], EA [auth b], A, C [auth B], CA [auth a], E [auth C], EA [auth b], G [auth D], GA [auth c], I [auth E], IA [auth d], K [auth F], KA [auth e], M [auth G], MA [auth f], OA [auth g]	ATP-dependent Clp protease proteolytic subunit 2	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process proteolysis metabolic process cellular process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins	endopeptidase Clp complex protein-containing complex catalytic complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], QA [auth h], S [auth J], SA [auth i], U [auth K], UA [auth j], W [auth L], WA [auth k], Y [auth M], YA [auth l]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], QA [auth h], S [auth J], SA [auth i], U [auth K], UA [auth j], W [auth L], WA [auth k], Y [auth M], YA [auth l]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], QA [auth h], S [auth J], SA [auth i], U [auth K], UA [auth j], W [auth L], WA [auth k], Y [auth M], YA [auth l]	IPR033135	ClpP, histidine active site	Active Site
AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], AA [auth N], AB [auth m], CB [auth n], O [auth H], Q [auth I], QA [auth h], S [auth J], SA [auth i], U [auth K], UA [auth j], W [auth L], WA [auth k], Y [auth M], YA [auth l]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
A, C [auth B], CA [auth a], E [auth C], EA [auth b], A, C [auth B], CA [auth a], E [auth C], EA [auth b], G [auth D], GA [auth c], I [auth E], IA [auth d], K [auth F], KA [auth e], M [auth G], MA [auth f], OA [auth g]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, C [auth B], CA [auth a], E [auth C], EA [auth b], A, C [auth B], CA [auth a], E [auth C], EA [auth b], G [auth D], GA [auth c], I [auth E], IA [auth d], K [auth F], KA [auth e], M [auth G], MA [auth f], OA [auth g]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A, C [auth B], CA [auth a], E [auth C], EA [auth b], A, C [auth B], CA [auth a], E [auth C], EA [auth b], G [auth D], GA [auth c], I [auth E], IA [auth d], K [auth F], KA [auth e], M [auth G], MA [auth f], OA [auth g]	IPR018215	ClpP, Ser active site	Active Site
A, C [auth B], CA [auth a], E [auth C], EA [auth b], A, C [auth B], CA [auth a], E [auth C], EA [auth b], G [auth D], GA [auth c], I [auth E], IA [auth d], K [auth F], KA [auth e], M [auth G], MA [auth f], OA [auth g]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
A, C [auth B], CA [auth a], E [auth C], EA [auth b], A, C [auth B], CA [auth a], E [auth C], EA [auth b], G [auth D], GA [auth c], I [auth E], IA [auth d], K [auth F], KA [auth e], M [auth G], MA [auth f], OA [auth g]	IPR033135	ClpP, histidine active site	Active Site

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 5DZK | pdb_00005dzk

Crystal structure of the active form of the proteolytic complex clpP1 and clpP2

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

5DZK | pdb_00005dzk