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 5DQD | pdb_00005dqd

Structure of S55-5 Fab in complex with lipid A carbohydrate backbone

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth H]d5dqdh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
A [auth L]d5dqdl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
A [auth L]d5dqdl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth H]Como_SCPe5dqdH1 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: Como_SCPECOD (v295.2)
A [auth L]Como_SCPe5dqdL1 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: Como_SCPECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth H]S55-3 Fab VH-CH1 Mus musculus (house mouse) IGHV5-6*02, IGHJ4*01, IGHG1*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202638-0)
A [auth L]S55-3 Fab L-KAPPA Mus musculus (house mouse) IGKV3-5*01, IGKJ1*01, IGKJ2*01, IGKC*01, IGKC*02 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202638-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth H]Heavy ChainIGHV5 -2-(acetylamino)-6-O-[2-(acetylamino)-2-deoxy-4-O-phosphono-beta-D-glucopyranosyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranoseSAbDab (2026-10-02)
A [auth L]Light ChainIGKV3 Kappa2-(acetylamino)-6-O-[2-(acetylamino)-2-deoxy-4-O-phosphono-beta-D-glucopyranosyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranoseSAbDab (2026-10-02)