5DIZ
Crystal Structure of nuclear proteinaceous RNase P 2 (PRORP2) from A. thaliana
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | ARM repeat-like | 8095927 | 3000116 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PIN domain-like | 8095926 | 3001041 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ARM repeat-like | 8095927 | 3000116 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PIN domain-like | 8095926 | 3001041 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF17177 | e5dizB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF17177 | ECOD (1.6) |
B | PF16953 | e5dizB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF16953 | ECOD (1.6) |
B | F_UNCLASSIFIED | e5dizB2 | A: few secondary structure elements | X: Protein-only RNase P Zn-binding domain (From Topology) | H: Protein-only RNase P Zn-binding domain (From Topology) | T: Protein-only RNase P Zn-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF17177 | e5dizA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF17177 | ECOD (1.6) |
A | PF16953 | e5dizA3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF16953 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5dizA2 | A: few secondary structure elements | X: Protein-only RNase P Zn-binding domain (From Topology) | H: Protein-only RNase P Zn-binding domain (From Topology) | T: Protein-only RNase P Zn-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
B | 3.40.50.11980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
A | 3.40.50.11980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17177 | Pentacotripeptide-repeat region of PRORP (PPR_long) | Pentacotripeptide-repeat region of PRORP | - | Repeat | |
PF16953 | Protein-only RNase P (PRORP) | Protein-only RNase P | PRORPs (protein-only RNase P) are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes [1]. Arabidopsis thaliana contains PRORP enzymes (PRORP1, PRORP2 and PRORP3) where PRORP1 localizes to mitocho ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033443 | Pentacotripeptide-repeat region of PRORP | Domain | |
IPR031595 | Protein-only RNase P, C-terminal | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |