5DII | pdb_00005dii

Structure of an engineered bacterial microcompartment shell protein binding a [4Fe-4S] cluster

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d5diif1	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
E	d5diie1	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
D	d5diid1	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
B	d5diib1	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e5diiF1	A: dsRBD-like	X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: IBR_2	F:	ECOD (20:10:01)
E		e5diiE1	A: dsRBD-like	X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: IBR_2	F:	ECOD (20:10:01)
D		e5diiD1	A: dsRBD-like	X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: IBR_2	F:	ECOD (20:10:01)
C		e5diiC1	A: dsRBD-like	X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: IBR_2	F:	ECOD (20:10:01)
B		e5diiB1	A: dsRBD-like	X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: IBR_2	F:	ECOD (20:10:01)
A		e5diiA1	A: dsRBD-like	X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: IBR_2	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
E	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
D	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
C	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
B	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
A	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR011238	Bacterial microcompartment shell protein PduT	Family
A, B, C, D, E A, B, C, D, E, F	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR050575	Bacterial microcompartment shell	Family
A, B, C, D, E A, B, C, D, E, F	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR037233	CcmK-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.