5DBN | pdb_00005dbn

Crystal structure of AtoDA complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G	d5dbng_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Escherichia coli DH5[alpha] ) [TaxId: 668369 ],	SCOPe (2.08)
E	d5dbne_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Escherichia coli DH5[alpha] ) [TaxId: 668369 ],	SCOPe (2.08)
C	d5dbnc_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Escherichia coli DH5[alpha] ) [TaxId: 668369 ],	SCOPe (2.08)
A	d5dbna_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Escherichia coli DH5[alpha] ) [TaxId: 668369 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2 Family	CoA transferase beta subunit-like	8098931	4001857	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	NagB/RpiA/CoA transferase-like	8098932	3000693	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8098932	3000693	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8098932	3000693	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8098932	3000693	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8040065	3000693	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8040065	3000693	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8040065	3000693	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8040065	3000693	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	CoA_trans_1	e5dbnH1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
F	CoA_trans_1	e5dbnF1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
D	CoA_trans_1	e5dbnD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
B	CoA_trans_1	e5dbnB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
G	CoA_trans	e5dbnG1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
E	CoA_trans	e5dbnE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
C	CoA_trans	e5dbnC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
A	CoA_trans	e5dbnA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
F	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
D	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
B	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
G	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
E	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
C	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
A	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H	PF01144	Coenzyme A transferase (CoA_trans)	Coenzyme A transferase		Domain
A, C, E, G	PF01144	Coenzyme A transferase (CoA_trans)	Coenzyme A transferase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	Acetate CoA-transferase subunit beta	acetate CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity butyrate-acetoacetate CoA-transferase activity	fatty acid metabolic process oxoacid metabolic process short-chain fatty acid metabolic process carboxylic acid metabolic process primary metabolic process organic acid metabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
A, C, E, G	Acetate CoA-transferase subunit alpha	acetate CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity butyrate-acetoacetate CoA-transferase activity	fatty acid metabolic process oxoacid metabolic process short-chain fatty acid metabolic process carboxylic acid metabolic process primary metabolic process organic acid metabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR004164	Coenzyme A transferase active site	Active Site
B, D, F, H	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
B, D, F, H	IPR004165	Coenzyme A transferase family I	Family
B, D, F, H	IPR012791	3-oxoacid CoA-transferase, subunit B	Domain
A, C, E, G	IPR012792	3-oxoacid CoA-transferase, subunit A	Domain
A, C, E, G	IPR004163	Coenzyme A transferase binding site	Binding Site
A, C, E, G	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A, C, E, G	IPR004165	Coenzyme A transferase family I	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.