5D17

Structure of the C-terminal domain of TnsE at 2.85 resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
A	SCOP2 Family	TnsE C-terminal domain-like	8053438	4007609	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
L [auth M]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	PF18623	e5d17E1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
A	PF18623	e5d17A1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
B	PF18623	e5d17B1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
C	PF18623	e5d17C1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
D	PF18623	e5d17D1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
F	PF18623	e5d17F1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
G	PF18623	e5d17G1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
H	PF18623	e5d17H1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
I	PF18623	e5d17I1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
J [auth K]	PF18623	e5d17K1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
K [auth L]	PF18623	e5d17L1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)
L [auth M]	PF18623	e5d17M1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: PF18623	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	PF18623	TnsE C-terminal domain (TnsE_C)	TnsE C-terminal domain	The bacterial transposon Tn7 facilitates horizontal transfer by directing transposition into actively replicating DNA with the element-encoded protein TnsE. Structural analysis of the C-terminal domain of TnsE identified a central V-shaped loop that ...	The bacterial transposon Tn7 facilitates horizontal transfer by directing transposition into actively replicating DNA with the element-encoded protein TnsE. Structural analysis of the C-terminal domain of TnsE identified a central V-shaped loop that toggles between two distinct conformations. It is suggested that a conformational change within the C-terminal domain of TnsE underlies target site selection by regulating stable engagement of the target DNA while providing a signal for activating transposition [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	Transposon Tn7 transposition protein TnsE	DNA binding binding organic cyclic compound binding nucleic acid binding	nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular process transposition	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	IPR041419	TnsE, C-terminal	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	IPR016421	Transposition, TnsE	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.