5D17 | pdb_00005d17

Structure of the C-terminal domain of TnsE at 2.85 resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth M]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
A	SCOP2 Family	TnsE C-terminal domain-like	8053438	4007609	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth M]	EUF08283	e5d17M1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
K [auth L]	EUF08283	e5d17L1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
J [auth K]	EUF08283	e5d17K1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
I	EUF08283	e5d17I1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
H	EUF08283	e5d17H1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
G	EUF08283	e5d17G1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
F	EUF08283	e5d17F1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
E	EUF08283	e5d17E1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
D	EUF08283	e5d17D1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
C	EUF08283	e5d17C1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
B	EUF08283	e5d17B1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)
A	EUF08283	e5d17A1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Transposon Tn7 transposition protein TnsE C-terminal domain (From Topology)	T: Transposon Tn7 transposition protein TnsE C-terminal domain	F: EUF08283	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	PF18623	TnsE C-terminal domain (TnsE_C)	TnsE C-terminal domain	The bacterial transposon Tn7 facilitates horizontal transfer by directing transposition into actively replicating DNA with the element-encoded protein TnsE. Structural analysis of the C-terminal domain of TnsE identified a central V-shaped loop that ...	The bacterial transposon Tn7 facilitates horizontal transfer by directing transposition into actively replicating DNA with the element-encoded protein TnsE. Structural analysis of the C-terminal domain of TnsE identified a central V-shaped loop that toggles between two distinct conformations. It is suggested that a conformational change within the C-terminal domain of TnsE underlies target site selection by regulating stable engagement of the target DNA while providing a signal for activating transposition [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	Transposon Tn7 transposition protein TnsE	DNA binding binding nucleic acid binding	nucleobase-containing compound metabolic process DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process transposition	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	IPR041419	TnsE, C-terminal	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	IPR016421	Transposition, TnsE	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.