5D17 | pdb_00005d17

Structure of the C-terminal domain of TnsE at 2.85 resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TnsE C-terminal domain-like	8053438	4007609	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)
L [auth M]	SCOP2B Superfamily	TnsE C-terminal domain-like	8053439	3002187	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IF-2B	e5d17A1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
B	IF-2B	e5d17B1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
C	IF-2B	e5d17C1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
D	IF-2B	e5d17D1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
E	IF-2B	e5d17E1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
F	IF-2B	e5d17F1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
G	IF-2B	e5d17G1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
H	IF-2B	e5d17H1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
I	IF-2B	e5d17I1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
J [auth K]	IF-2B	e5d17K1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
K [auth L]	IF-2B	e5d17L1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)
L [auth M]	IF-2B	e5d17M1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: IF-2B	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	Transposon Tn7 transposition protein TnsE	DNA binding binding nucleic acid binding	nucleobase-containing compound metabolic process DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process transposition	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	IPR041419	TnsE, C-terminal	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K], K [auth L], L [auth M]	IPR016421	Transposition, TnsE	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.