Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
I [auth B]d5d0kb_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Ubiquitin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
J [auth E]d5d0ke_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Ubiquitin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth H]d5d0kh_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Ubiquitin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
L [auth K]d5d0kk_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Ubiquitin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad5d0ka1 Alpha and beta proteins (a+b) UBC-like UBC-like UBC-related Ubiquitin conjugating enzyme, UBC Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad5d0ka2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth G]d5d0kg1 Alpha and beta proteins (a+b) UBC-like UBC-like UBC-related Ubiquitin conjugating enzyme, UBC Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth G]d5d0kg2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth J]d5d0kj1 Alpha and beta proteins (a+b) UBC-like UBC-like UBC-related Ubiquitin conjugating enzyme, UBC Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth J]d5d0kj2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth D]d5d0kd1 Alpha and beta proteins (a+b) UBC-like UBC-like UBC-related Ubiquitin conjugating enzyme, UBC Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth D]d5d0kd2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth B]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyRING/U-box like 8079691 3000160 SCOP2B (2022-06-29)
D [auth F]SCOP2 FamilyRING finger domain, C3HC4 8079690 4000374 SCOP2 (2022-06-29)
D [auth F]SCOP2 SuperfamilyRING/U-box like 8079691 3000160 SCOP2 (2022-06-29)
F [auth I]SCOP2B SuperfamilyRING/U-box like 8079691 3000160 SCOP2B (2022-06-29)
H [auth L]SCOP2B SuperfamilyRING/U-box like 8079691 3000160 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyUBC-like 8040137 3000570 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyUBC-like 8040137 3000570 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilyUBC-like 8040137 3000570 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyUBC-like 8040137 3000570 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth B]e5d0kB1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)
J [auth E]e5d0kE1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)
K [auth H]e5d0kH1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)
L [auth K]e5d0kK1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)
B [auth C]SPRYe5d0kC1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: Type II ABC importer transmembrane domain foldF: SPRYECOD (v294.1)
D [auth F]SPRYe5d0kF1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: Type II ABC importer transmembrane domain foldF: SPRYECOD (v294.1)
F [auth I]SPRYe5d0kI1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: Type II ABC importer transmembrane domain foldF: SPRYECOD (v294.1)
H [auth L]SPRYe5d0kL1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: Type II ABC importer transmembrane domain foldF: SPRYECOD (v294.1)
Ae5d0kA1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)
E [auth G]e5d0kG1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)
G [auth J]e5d0kJ1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)
C [auth D]e5d0kD1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: Snake toxin-likeT: Snake toxin-likeF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth B],
J [auth E],
K [auth H],
L [auth K]
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
B [auth C],
D [auth F],
F [auth I],
H [auth L]
PF13639Ring finger domain (zf-RING_2)Ring finger domainDomain
A,
C [auth D],
E [auth G],
G [auth J]
PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth B],
J [auth E],
K [auth H],
L [auth K]
Polyubiquitin-B
B [auth C],
D [auth F],
F [auth I],
H [auth L]
RING finger protein 165
A,
C [auth D],
E [auth G],
G [auth J]
Ubiquitin-conjugating enzyme E2 D2